Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NP433_RS14040 Genome accession   NZ_CP101930
Coordinates   2718674..2719420 (-) Length   248 a.a.
NCBI ID   WP_212058953.1    Uniprot ID   -
Organism   Bacillus subtilis strain BGSC 10A5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2713674..2724420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP433_RS14015 (NP433_14015) mreC 2714080..2714952 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  NP433_RS14020 (NP433_14020) mreB 2714983..2715996 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NP433_RS14025 (NP433_14025) radC 2716088..2716783 (-) 696 WP_014480455.1 DNA repair protein RadC -
  NP433_RS14030 (NP433_14030) maf 2716820..2717389 (-) 570 WP_033882939.1 Maf family nucleotide pyrophosphatase -
  NP433_RS14035 (NP433_14035) spoIIB 2717542..2718540 (-) 999 WP_015251545.1 stage II sporulation protein SpoIIB -
  NP433_RS14040 (NP433_14040) comC 2718674..2719420 (-) 747 WP_212058953.1 A24 family peptidase Machinery gene
  NP433_RS14045 (NP433_14045) folC 2719562..2720854 (-) 1293 WP_256682918.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NP433_RS14050 (NP433_14050) valS 2720914..2723556 (-) 2643 WP_256683498.1 valine--tRNA ligase -
  NP433_RS14055 (NP433_14055) - 2724004..2724195 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26437.01 Da        Isoelectric Point: 9.7944

>NTDB_id=713021 NP433_RS14040 WP_212058953.1 2718674..2719420(-) (comC) [Bacillus subtilis strain BGSC 10A5]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFALIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=713021 NP433_RS14040 WP_212058953.1 2718674..2719420(-) (comC) [Bacillus subtilis strain BGSC 10A5]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGCTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992