Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PNF29_RS10210 Genome accession   NZ_CP116773
Coordinates   1921026..1921646 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   P39792
Organism   Bacillus subtilis strain SRCM125727     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1916026..1926646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS10190 (PNF29_10190) dnaD 1916323..1917021 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  PNF29_RS10195 (PNF29_10195) nth 1917040..1917699 (+) 660 WP_009967580.1 endonuclease III -
  PNF29_RS10200 (PNF29_10200) ypoC 1917696..1918190 (+) 495 WP_041351582.1 YpoC family protein -
  PNF29_RS10205 (PNF29_10205) ponA 1918266..1921004 (-) 2739 WP_144461803.1 PBP1A family penicillin-binding protein -
  PNF29_RS10210 (PNF29_10210) recU 1921026..1921646 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  PNF29_RS10215 (PNF29_10215) yppC 1921687..1922613 (+) 927 WP_272516163.1 DUF2515 domain-containing protein -
  PNF29_RS10220 (PNF29_10220) sspM 1922646..1922750 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  PNF29_RS10225 (PNF29_10225) yppD 1922949..1923194 (+) 246 WP_015251831.1 YppD family protein -
  PNF29_RS10230 (PNF29_10230) yppE 1923240..1923611 (+) 372 WP_017696991.1 YppE family protein -
  PNF29_RS10235 (PNF29_10235) yppF 1923650..1923838 (-) 189 WP_003230690.1 YppF family protein -
  PNF29_RS10240 (PNF29_10240) sppG 1924025..1924402 (+) 378 WP_015251832.1 YppG family protein -
  PNF29_RS10245 (PNF29_10245) ypqA 1924423..1924842 (-) 420 WP_041336373.1 Hsp20/alpha crystallin family protein -
  PNF29_RS10250 (PNF29_10250) ptsA 1924980..1925486 (+) 507 WP_009967573.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=713020 PNF29_RS10210 WP_004399067.1 1921026..1921646(-) (recU) [Bacillus subtilis strain SRCM125727]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=713020 PNF29_RS10210 WP_004399067.1 1921026..1921646(-) (recU) [Bacillus subtilis strain SRCM125727]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGACGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1RZN
  PDB 1ZP7
  PDB 5FDK

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1