Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   CHBNTHi_RS00265 Genome accession   NZ_AP018781
Coordinates   56407..57123 (-) Length   238 a.a.
NCBI ID   WP_110437797.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-V-1 isolate 13H43     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51407..62123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHBNTHi_RS00245 (CHBNV1_00490) nrdR 51499..51948 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  CHBNTHi_RS00250 (CHBNV1_00500) recC 52003..55383 (-) 3381 WP_110437795.1 exodeoxyribonuclease V subunit gamma -
  CHBNTHi_RS00255 (CHBNV1_00510) comQ 55429..55716 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  CHBNTHi_RS00260 (CHBNV1_00520) comP 55709..56392 (-) 684 WP_110437796.1 DUF2572 family protein Machinery gene
  CHBNTHi_RS00265 (CHBNV1_00530) comO 56407..57123 (-) 717 WP_110437797.1 type II secretion system protein J Machinery gene
  CHBNTHi_RS00270 (CHBNV1_00540) comN 57123..57635 (-) 513 WP_005669611.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CHBNTHi_RS00275 (CHBNV1_00550) suhB 57835..58638 (+) 804 WP_005669608.1 inositol-1-monophosphatase -
  CHBNTHi_RS00280 (CHBNV1_00560) nrfE 58747..60654 (+) 1908 WP_101160209.1 heme lyase NrfEFG subunit NrfE -
  CHBNTHi_RS00285 (CHBNV1_00570) - 60654..61184 (+) 531 WP_005669602.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26793.13 Da        Isoelectric Point: 9.5508

>NTDB_id=71302 CHBNTHi_RS00265 WP_110437797.1 56407..57123(-) (comO) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRAFNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=71302 CHBNTHi_RS00265 WP_110437797.1 56407..57123(-) (comO) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATTCAAACGCAAAATCAACACATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTCAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCGCCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAGGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCGCTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment