Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NP433_RS12075 Genome accession   NZ_CP101930
Coordinates   2385894..2386697 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain BGSC 10A5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2380894..2391697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP433_RS12050 (NP433_12050) glpQB 2382033..2382764 (-) 732 WP_174223016.1 glycerophosphodiester phosphodiesterase -
  NP433_RS12055 (NP433_12055) yqiI 2382843..2383463 (-) 621 WP_076458098.1 N-acetylmuramoyl-L-alanine amidase -
  NP433_RS12060 (NP433_12060) - 2383483..2383779 (-) 297 WP_014480225.1 hypothetical protein -
  NP433_RS12065 (NP433_12065) - 2384086..2384238 (+) 153 WP_130572550.1 hypothetical protein -
  NP433_RS12070 (NP433_12070) yqiG 2384311..2385429 (+) 1119 WP_095843828.1 NADH-dependent flavin oxidoreductase -
  NP433_RS12075 (NP433_12075) spo0A 2385894..2386697 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NP433_RS12080 (NP433_12080) spoIVB 2386973..2388253 (-) 1281 WP_256682870.1 SpoIVB peptidase -
  NP433_RS12085 (NP433_12085) recN 2388428..2390158 (-) 1731 WP_161986194.1 DNA repair protein RecN Machinery gene
  NP433_RS12090 (NP433_12090) argR 2390195..2390644 (-) 450 WP_003230265.1 arginine repressor ArgR -
  NP433_RS12095 (NP433_12095) yqxC 2390742..2391587 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=713002 NP433_RS12075 WP_003226427.1 2385894..2386697(-) (spo0A) [Bacillus subtilis strain BGSC 10A5]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=713002 NP433_RS12075 WP_003226427.1 2385894..2386697(-) (spo0A) [Bacillus subtilis strain BGSC 10A5]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1