Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NP433_RS07850 Genome accession   NZ_CP101930
Coordinates   1486790..1487068 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain BGSC 10A5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1481790..1492068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP433_RS07830 (NP433_07830) panEB 1482978..1483889 (+) 912 WP_137200747.1 ketopantoate reductase family protein -
  NP433_RS07835 (NP433_07835) ampS 1483923..1485155 (-) 1233 WP_024572116.1 aminopeptidase -
  NP433_RS07840 (NP433_07840) ykpC 1485264..1485398 (-) 135 WP_003238865.1 protein YkpC -
  NP433_RS07845 (NP433_07845) mreBH 1485499..1486506 (-) 1008 WP_024572115.1 cell shape-determining protein MreBH -
  NP433_RS07850 (NP433_07850) abrB 1486790..1487068 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NP433_RS07855 (NP433_07855) kinC 1487258..1488544 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  NP433_RS07860 (NP433_07860) ykqA 1488560..1489387 (+) 828 WP_256683409.1 gamma-glutamylcyclotransferase -
  NP433_RS07865 (NP433_07865) ktrC 1489450..1490115 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  NP433_RS07870 (NP433_07870) ade 1490271..1492004 (+) 1734 WP_227057429.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=712996 NP433_RS07850 WP_003244728.1 1486790..1487068(+) (abrB) [Bacillus subtilis strain BGSC 10A5]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=712996 NP433_RS07850 WP_003244728.1 1486790..1487068(+) (abrB) [Bacillus subtilis strain BGSC 10A5]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576