Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FFF71_RS17455 Genome accession   NZ_AP024114
Coordinates   3620779..3621384 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain JML285     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3615779..3626384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFF71_RS17435 (HmCmsJML285_3423) aes 3615816..3616775 (+) 960 WP_000801832.1 acetyl esterase -
  FFF71_RS17440 (HmCmsJML285_3424) hemH 3616772..3617734 (-) 963 WP_001250088.1 ferrochelatase -
  FFF71_RS17445 (HmCmsJML285_3425) adk 3617970..3618614 (-) 645 WP_001220233.1 adenylate kinase -
  FFF71_RS17450 (HmCmsJML285_3426) htpG 3618795..3620669 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  FFF71_RS17455 (HmCmsJML285_3427) recR 3620779..3621384 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FFF71_RS17460 (HmCmsJML285_3428) ybaB 3621384..3621713 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FFF71_RS17465 (HmCmsJML285_3429) dnaX 3621766..3623697 (-) 1932 WP_137515259.1 DNA polymerase III subunit gamma/tau -
  FFF71_RS17470 (HmCmsJML285_3430) apt 3623826..3624377 (-) 552 WP_040090080.1 adenine phosphoribosyltransferase -
  FFF71_RS17475 (HmCmsJML285_3431) ybaN 3624530..3624907 (-) 378 WP_001188905.1 DUF454 family protein -
  FFF71_RS17480 (HmCmsJML285_3432) priC 3624977..3625504 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  FFF71_RS17485 (HmCmsJML285_3433) rsmS 3625518..3625679 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=71299 FFF71_RS17455 WP_001195025.1 3620779..3621384(-) (recR) [Escherichia coli strain JML285]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=71299 FFF71_RS17455 WP_001195025.1 3620779..3621384(-) (recR) [Escherichia coli strain JML285]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment