Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   PNF29_RS03380 Genome accession   NZ_CP116773
Coordinates   650475..651188 (+) Length   237 a.a.
NCBI ID   WP_014481000.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 645475..656188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS03345 (PNF29_03345) rppI 645734..646210 (+) 477 WP_014481002.1 8-oxo-dGTP diphosphatase -
  PNF29_RS03350 (PNF29_03350) rapZ 646235..647122 (+) 888 WP_003243903.1 RNase adapter RapZ -
  PNF29_RS03355 (PNF29_03355) mgfK 647124..648077 (+) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  PNF29_RS03360 (PNF29_03360) whiA 648100..649050 (+) 951 WP_003228147.1 DNA-binding protein WhiA -
  PNF29_RS03365 (PNF29_03365) crh 649074..649331 (+) 258 WP_003219835.1 HPr family phosphocarrier protein -
  PNF29_RS03370 (PNF29_03370) yvcN 649332..650066 (+) 735 WP_420720513.1 arylamine N-acetyltransferase family protein -
  PNF29_RS03375 (PNF29_03375) - 650119..650328 (-) 210 WP_272515940.1 hypothetical protein -
  PNF29_RS03380 (PNF29_03380) braR 650475..651188 (+) 714 WP_014481000.1 two-component system response regulator PsdR Regulator
  PNF29_RS03385 (PNF29_03385) psdS 651182..652252 (+) 1071 WP_210216003.1 two-component sensor histidine kinase PsdS -
  PNF29_RS03390 (PNF29_03390) psdA 652335..653114 (+) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  PNF29_RS03395 (PNF29_03395) psdB 653089..655029 (+) 1941 WP_210216004.1 ABC transporter permease -
  PNF29_RS03400 (PNF29_03400) ghrB 655067..656044 (-) 978 WP_072592561.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27541.46 Da        Isoelectric Point: 4.6774

>NTDB_id=712975 PNF29_RS03380 WP_014481000.1 650475..651188(+) (braR) [Bacillus subtilis strain SRCM125727]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RIDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSSRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=712975 PNF29_RS03380 WP_014481000.1 650475..651188(+) (braR) [Bacillus subtilis strain SRCM125727]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGATTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGATCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAAAATGAGGCCGAATGGAACAGCTCCCGTATTCTGTTTTCCCAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTTTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAACTGGAGAATGCCGGACTGA
AAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAGTGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.982

94.515

0.435