Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NP433_RS02090 Genome accession   NZ_CP101930
Coordinates   379123..379572 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain BGSC 10A5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 374123..384572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP433_RS02050 (NP433_02050) - 374561..374758 (+) 198 Protein_361 hypothetical protein -
  NP433_RS02055 (NP433_02055) - 374795..375115 (+) 321 Protein_362 RDD family protein -
  NP433_RS02060 (NP433_02060) yckD 375197..375529 (+) 333 WP_256683196.1 YckD family protein -
  NP433_RS02065 (NP433_02065) - 375657..376079 (+) 423 WP_174616579.1 MarR family winged helix-turn-helix transcriptional regulator -
  NP433_RS02070 (NP433_02070) - 376067..376408 (+) 342 WP_032724911.1 DUF3147 family protein -
  NP433_RS02075 (NP433_02075) - 376427..377155 (+) 729 WP_174223466.1 AAA family ATPase -
  NP433_RS02080 (NP433_02080) bglC 377228..378661 (+) 1434 WP_097080589.1 6-phospho-beta-glucosidase -
  NP433_RS02085 (NP433_02085) nin/comJ 378698..379096 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  NP433_RS02090 (NP433_02090) nucA/comI 379123..379572 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  NP433_RS02095 (NP433_02095) tlpC 379740..381461 (-) 1722 WP_076458400.1 methyl-accepting chemotaxis protein TlpC -
  NP433_RS02100 (NP433_02100) hxlB 381572..382129 (-) 558 WP_144483821.1 6-phospho-3-hexuloisomerase -
  NP433_RS02105 (NP433_02105) hxlA 382135..382767 (-) 633 WP_032724921.1 3-hexulose-6-phosphate synthase -
  NP433_RS02110 (NP433_02110) hxlR 382999..383361 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=712972 NP433_RS02090 WP_003234608.1 379123..379572(-) (nucA/comI) [Bacillus subtilis strain BGSC 10A5]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=712972 NP433_RS02090 WP_003234608.1 379123..379572(-) (nucA/comI) [Bacillus subtilis strain BGSC 10A5]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98