Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PND17_RS08710 Genome accession   NZ_CP116772
Coordinates   1657835..1658608 (+) Length   257 a.a.
NCBI ID   WP_002946256.1    Uniprot ID   Q5M6K1
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1652835..1663608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS08680 (PND17_08680) - 1652856..1653638 (+) 783 WP_022096465.1 protein-ADP-ribose hydrolase -
  PND17_RS08685 (PND17_08685) - 1653676..1654087 (-) 412 Protein_1694 thioesterase family protein -
  PND17_RS08690 (PND17_08690) traF 1654109..1654444 (-) 336 WP_002951977.1 conjugal transfer protein TraF -
  PND17_RS08695 (PND17_08695) - 1654604..1655566 (+) 963 Protein_1696 ribose-phosphate diphosphokinase -
  PND17_RS08700 (PND17_08700) - 1655615..1656461 (-) 847 Protein_1697 transposase -
  PND17_RS08705 (PND17_08705) - 1656673..1657848 (+) 1176 WP_011680586.1 pyridoxal phosphate-dependent aminotransferase -
  PND17_RS08710 (PND17_08710) recO 1657835..1658608 (+) 774 WP_002946256.1 DNA repair protein RecO Machinery gene
  PND17_RS08715 (PND17_08715) plsX 1658824..1659828 (+) 1005 WP_011680588.1 phosphate acyltransferase PlsX -
  PND17_RS08720 (PND17_08720) - 1659828..1660073 (+) 246 WP_002949008.1 phosphopantetheine-binding protein -
  PND17_RS08725 (PND17_08725) purC 1660358..1661065 (+) 708 WP_011226729.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29830.05 Da        Isoelectric Point: 5.0766

>NTDB_id=712948 PND17_RS08710 WP_002946256.1 1657835..1658608(+) (recO) [Streptococcus thermophilus strain strain TSGB 4141]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=712948 PND17_RS08710 WP_002946256.1 1657835..1658608(+) (recO) [Streptococcus thermophilus strain strain TSGB 4141]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCATTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607