Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PND17_RS06980 Genome accession   NZ_CP116772
Coordinates   1327222..1327818 (-) Length   198 a.a.
NCBI ID   WP_002949408.1    Uniprot ID   Q5M648
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1322222..1332818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS06965 (PND17_06965) - 1322903..1323343 (+) 441 WP_011225416.1 DUF805 domain-containing protein -
  PND17_RS06970 (PND17_06970) pepC 1323445..1324782 (+) 1338 WP_271298389.1 aminopeptidase C -
  PND17_RS06975 (PND17_06975) pbp1a 1324892..1327222 (-) 2331 WP_271298390.1 penicillin-binding protein PBP1A -
  PND17_RS06980 (PND17_06980) recU 1327222..1327818 (-) 597 WP_002949408.1 Holliday junction resolvase RecU Machinery gene
  PND17_RS06985 (PND17_06985) - 1327895..1328410 (+) 516 WP_002949411.1 DUF1273 domain-containing protein -
  PND17_RS06990 (PND17_06990) gpsB 1328519..1328851 (+) 333 WP_014607932.1 cell division regulator GpsB -
  PND17_RS07000 (PND17_07000) - 1329384..1330550 (+) 1167 WP_002949415.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  PND17_RS07005 (PND17_07005) - 1330553..1332415 (+) 1863 WP_271298391.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22827.38 Da        Isoelectric Point: 10.1106

>NTDB_id=712924 PND17_RS06980 WP_002949408.1 1327222..1327818(-) (recU) [Streptococcus thermophilus strain strain TSGB 4141]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=712924 PND17_RS06980 WP_002949408.1 1327222..1327818(-) (recU) [Streptococcus thermophilus strain strain TSGB 4141]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M648

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.754

100

0.51