Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PND17_RS05905 Genome accession   NZ_CP116772
Coordinates   1129231..1131036 (+) Length   601 a.a.
NCBI ID   WP_014608042.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124231..1136036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS05895 (PND17_05895) - 1126068..1126964 (-) 897 WP_002948119.1 LysR family transcriptional regulator -
  PND17_RS05900 (PND17_05900) coiA 1128261..1129220 (+) 960 WP_011680817.1 competence protein CoiA Machinery gene
  PND17_RS05905 (PND17_05905) pepF 1129231..1131036 (+) 1806 WP_014608042.1 oligoendopeptidase F Regulator
  PND17_RS05910 (PND17_05910) - 1131218..1131925 (+) 708 WP_002946027.1 O-methyltransferase -
  PND17_RS05915 (PND17_05915) - 1131987..1133102 (+) 1116 WP_271298363.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69226.41 Da        Isoelectric Point: 4.5883

>NTDB_id=712918 PND17_RS05905 WP_014608042.1 1129231..1131036(+) (pepF) [Streptococcus thermophilus strain strain TSGB 4141]
MSDNRCHLEEKYTWDLTTIFATDADWETEYESIVQDLKKASSFAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYNAKASNLYSQLSEAFAYFEPEFMALEAEKLVSFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVIELTHGNFTTLMESKNREVRKGAYEAMYRTYEQFQHTYAQTLQGVVKVH
NYMAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLELDKLKMYDVYAPLSETETALTYEEALK
KAEEVLAIFGEEYSKEVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVNDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGNEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=712918 PND17_RS05905 WP_014608042.1 1129231..1131036(+) (pepF) [Streptococcus thermophilus strain strain TSGB 4141]
ATGTCAGACAATCGTTGTCATTTAGAAGAAAAATATACATGGGATTTGACTACCATTTTTGCGACAGACGCTGATTGGGA
GACTGAATATGAAAGCATTGTTCAGGATTTGAAGAAGGCTAGTTCCTTTGCTGGTCACCTCTTGGACTCAGCCAAGAATT
TGCTTGAGGCAACAGAACTTTATATGAGTTTGATGCGTCGTTTGGAAAAAATCTACGTTTATGCGTCAATGAAAAATGAC
CAAGATACAACGGTAGGTCTTTACCAAGAGTACAATGCCAAAGCCTCAAACCTATACTCACAGTTGAGTGAAGCCTTTGC
CTACTTTGAGCCTGAATTTATGGCTTTGGAAGCTGAAAAATTAGTATCCTTCAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGTCTTTTGGCAAACAAAGACCACGTTCTTTCTCAAGAAGCAGAAGAACTCTTGGCAGCAGCT
GGTGATATTTTTAACGGTCCAACGGATACCTTCAACGTCTTGGATAATGCTGATATCCTCTTTCCATGGGTATCGGATGG
TCAAGGGGATGTGATTGAGTTGACACATGGTAACTTTACCACCCTCATGGAATCTAAGAATCGTGAAGTCCGAAAGGGAG
CCTATGAAGCTATGTATAGAACTTATGAGCAGTTCCAACATACCTATGCACAAACACTTCAAGGCGTTGTCAAGGTTCAC
AATTATATGGCTAAAGTTCGTCACTATAATTCGGCACGTCATGCAGCACTTGCAGCTAACTTTATTCCAGAAAGTGTTTA
CGACTCACTCTTAGAATCAGTGAATAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTGTTGGAAC
TTGATAAGCTTAAGATGTATGATGTTTATGCACCACTTTCTGAGACAGAGACTGCTCTTACTTATGAAGAAGCCCTCAAG
AAAGCAGAGGAAGTCTTGGCTATCTTTGGTGAGGAGTATAGTAAAGAGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
TGTTCACCCTAACAAAGGGAAACGTTCAGGCGCCTACTCAGGTGGTGCCTATGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGACACTTTGGACAATCTCTTTACCTTGGTTCACGAGACTGGCCACAGTTTGCATTCAACTTTCACACGTCAGACA
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCTGAAATTGCGTCTACAACTAATGAAAATATCTTGACAGAAAC
ACTTCTTAAAGAAGTTAACGATGATAAGACACGTTTTGCTATCCTTAACCACTATTTAGATGGATTTAAGGGAACCGTCT
TCCGTCAAACGCAATTTGCCGAGTTTGAGCATGCTATCCATGAAGCGGATGCATCGGGTCAAATCTTGACAGCAGACTTC
ATGAATAAGCTTTATGCAGACCTCAATGAGAAATACTATAACCTTAAAGCTGAAGATAACTATGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTTTATCAATATGCTACAGGATTTGCAGCAGCAAGCTACTTGGCAG
AAAAGATTGTTCACGGTAATGAAGAAGATAAAGAAGCTTACCTTACGTACCTTAAGGCAGGTAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGACATGACCAACACTGACTACTTGGATGCAGCTTTCAAGGTTTTCGAAGACCGCTT
AGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTTCATCTTTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

95.84

100

0.958