Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   PND17_RS04950 Genome accession   NZ_CP116772
Coordinates   929808..930878 (+) Length   356 a.a.
NCBI ID   WP_011227204.1    Uniprot ID   Q5LZT9
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 924808..935878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS04930 (PND17_04930) glgP 924990..927254 (+) 2265 WP_271298516.1 glycogen/starch/alpha-glucan family phosphorylase -
  PND17_RS04935 (PND17_04935) - 927360..927800 (-) 441 WP_272591610.1 hypothetical protein -
  PND17_RS04940 (PND17_04940) - 927742..928410 (-) 669 WP_271298018.1 hypothetical protein -
  PND17_RS04945 (PND17_04945) - 928593..929582 (+) 990 WP_271298017.1 lipoate--protein ligase -
  PND17_RS04950 (PND17_04950) xerS 929808..930878 (+) 1071 WP_011227204.1 tyrosine recombinase XerS Machinery gene
  PND17_RS04955 (PND17_04955) - 931040..933580 (-) 2541 WP_011225973.1 M1 family metallopeptidase -
  PND17_RS04960 (PND17_04960) phoU 933714..934367 (-) 654 WP_002950747.1 phosphate signaling complex protein PhoU -
  PND17_RS04965 (PND17_04965) pstB 934395..935153 (-) 759 WP_002950746.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41544.66 Da        Isoelectric Point: 9.7410

>NTDB_id=712906 PND17_RS04950 WP_011227204.1 929808..930878(+) (xerS) [Streptococcus thermophilus strain strain TSGB 4141]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKRMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=712906 PND17_RS04950 WP_011227204.1 929808..930878(+) (xerS) [Streptococcus thermophilus strain strain TSGB 4141]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTACTACTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATTAATTTAAAAAGGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATATGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5LZT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.303

100

0.823