Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   G6L23_RS12160 Genome accession   NZ_CP116730
Coordinates   2521368..2523176 (+) Length   602 a.a.
NCBI ID   WP_065703574.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain FPH-AT4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2516368..2528176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L23_RS12160 (G6L23_012160) recQ 2521368..2523176 (+) 1809 WP_065703574.1 DNA helicase RecQ Machinery gene
  G6L23_RS12165 (G6L23_012165) - 2523231..2524463 (-) 1233 WP_013635209.1 ROK family transcriptional regulator -
  G6L23_RS12170 (G6L23_012170) - 2524730..2525752 (+) 1023 WP_003514241.1 sugar ABC transporter substrate-binding protein -
  G6L23_RS12175 (G6L23_012175) - 2525975..2527057 (+) 1083 WP_065703576.1 ABC transporter permease -
  G6L23_RS12180 (G6L23_012180) - 2527057..2527839 (+) 783 WP_013635211.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 66978.74 Da        Isoelectric Point: 6.5091

>NTDB_id=712852 G6L23_RS12160 WP_065703574.1 2521368..2523176(+) (recQ) [Agrobacterium tumefaciens strain FPH-AT4]
MITDPLQILKTVYGYDTFRGQQAEIIRHVMAGNNAFVLMPTGGGKSLCYQIPALARKGMGLVVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRLLWQDMRAGKVDILYAAPETLLKPDVLDALQPISLSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPETPRMALTATADEPTRAEILGHLGINGSDAFIAGFDRPNIRYAIMEKDNPRTQLKRFLTGREDESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKGAREANQTHFQHGEAVIMVATVAFGMGIDKPDLRFVVHIDLPSSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAGDQRKNMERRKLDALLGLAETAGCRRRVLLSYFGDHCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGMEDERISSFGHDRITTYGIGKEHDNRTWRAILRQMVALRLIEVDLAG
HGGLSISEEGRRFLREKPSLMLRIPSAPRSARQQTNRKPTAIVLPDADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELAAARPASVGEMAQIPGVGDTKLERYGPAFLAAIVEHAASE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=712852 G6L23_RS12160 WP_065703574.1 2521368..2523176(+) (recQ) [Agrobacterium tumefaciens strain FPH-AT4]
GTGATCACCGACCCCTTGCAGATTCTCAAGACCGTCTATGGCTACGATACGTTTCGTGGACAGCAGGCCGAAATCATCCG
GCATGTGATGGCAGGCAACAATGCTTTTGTATTGATGCCAACAGGGGGCGGTAAGTCGCTTTGTTACCAGATTCCGGCGC
TCGCCCGTAAGGGAATGGGGCTGGTTGTTTCGCCCCTGATCGCGCTGATGGTTGATCAGGTCGCCGCCTTGCGTCAGGCA
GGTGTGCGGGCAGAAGCTCTCAACTCCGATCTTTCCCCAGAAGAGCGGCGGCTACTCTGGCAGGATATGCGGGCTGGCAA
GGTCGATATTCTCTATGCCGCGCCGGAGACCCTTCTTAAGCCGGATGTTCTGGATGCGCTTCAACCTATCAGCCTGTCGC
TGATCGCGATCGACGAAGCTCATTGCCTGTCGCAGTGGGGGCACGATTTCCGTCCCCCTTACCGCCAGCTAGACACGTTG
ATCGAGCGCTTTCCGGAGACGCCACGTATGGCGCTGACGGCGACTGCTGACGAGCCAACCCGCGCCGAAATTCTGGGTCA
TCTCGGGATCAACGGAAGCGACGCCTTCATAGCCGGATTCGATCGGCCAAATATCCGCTATGCGATCATGGAAAAGGATA
ATCCACGTACGCAGCTGAAGCGCTTCCTGACGGGTCGCGAAGACGAAAGCGGCATCGTCTATTGCCTTTCCAAACGCAAG
GTCGATGAGACGGCAGCCTGGCTGCGTGAGGAGGGGCGCGATGCGCTGCCCTATCACGCCGGCATGGACAAGGGCGCCCG
CGAGGCGAACCAGACCCACTTCCAGCATGGTGAAGCGGTCATCATGGTTGCAACCGTGGCTTTCGGCATGGGCATCGACA
AACCGGATTTGCGCTTCGTCGTGCATATCGATCTGCCCAGCAGCATCGAAGCCTATTATCAGGAAACCGGCCGTGCTGGC
CGTGATGGTCTGCCGTCCGACGTGCTTATGCTTTACGGTTATGAAGACATCGCATTGCGCAACCGCTTTATCGAAGAGTC
GGATGCGGGCGACCAGCGCAAAAACATGGAGCGCCGGAAGCTCGATGCGTTGCTTGGCCTCGCGGAAACAGCCGGTTGCC
GTCGGCGGGTGCTTTTGTCTTATTTCGGCGATCATTGCGAGCCCTGCGGCAATTGCGACACCTGTGCGGAACCGCCGGAC
CTGTTTGATGGTGCCATTGCCGCGCAGAAGTTGCTGTCCTGCATTTACCGCACGGGAGAACGTTTCGGCCAGGCCTATGT
CATCCGCGTATTGCTGGGCATGGAAGATGAACGGATATCGAGCTTTGGTCACGATCGGATCACCACCTACGGCATCGGCA
AAGAGCACGACAATCGCACCTGGCGGGCCATCCTGCGCCAGATGGTTGCGCTGCGCCTGATCGAGGTTGATCTGGCCGGT
CACGGGGGATTGTCCATTTCCGAAGAAGGGAGGCGGTTCCTGCGCGAAAAGCCGTCCCTGATGTTGAGGATACCGTCCGC
TCCCCGTTCGGCGCGACAACAGACGAATCGCAAGCCCACCGCCATTGTTCTACCGGATGCCGATCGCAGTCTCTTTGAGG
CGCTGCGTGCGAAGCGCATGGAAATTGCCCGCGCGCAGAACGTTCCGCCCTATGTGATTTTCCACGACAAGACACTCATT
GAGCTTGCGGCAGCAAGACCGGCCTCTGTGGGAGAAATGGCGCAGATACCTGGAGTGGGAGACACAAAGCTGGAACGATA
CGGCCCTGCTTTTCTGGCAGCGATCGTGGAACATGCCGCCAGCGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(220-322)

DEAD/DEAH box helicase (DEAD)

(22-177)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

HRDC domain (HRDC)

(530-595)

RQC domain (RQC)

(398-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.645

100

0.377