Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NP439_RS14625 Genome accession   NZ_CP101914
Coordinates   2974476..2976170 (-) Length   564 a.a.
NCBI ID   WP_256706717.1    Uniprot ID   -
Organism   Oceanobacillus jeddahense strain QA-1986 374     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2969476..2981170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP439_RS14605 (NP439_14605) lexA 2970529..2971149 (+) 621 WP_040985357.1 transcriptional repressor LexA -
  NP439_RS14610 (NP439_14610) - 2971325..2971588 (+) 264 WP_256706714.1 hypothetical protein -
  NP439_RS14615 (NP439_14615) spo0A 2971923..2972705 (-) 783 WP_040985353.1 sporulation transcription factor Spo0A -
  NP439_RS14620 (NP439_14620) spoIVB 2973029..2974228 (-) 1200 WP_256706715.1 SpoIVB peptidase -
  NP439_RS14625 (NP439_14625) recN 2974476..2976170 (-) 1695 WP_256706717.1 DNA repair protein RecN Machinery gene
  NP439_RS14630 (NP439_14630) ahrC 2976195..2976644 (-) 450 WP_040985350.1 transcriptional regulator AhrC/ArgR -
  NP439_RS14635 (NP439_14635) - 2976680..2977489 (-) 810 WP_256706718.1 TlyA family RNA methyltransferase -
  NP439_RS14640 (NP439_14640) - 2977530..2978414 (-) 885 WP_256706720.1 polyprenyl synthetase family protein -
  NP439_RS14645 (NP439_14645) - 2978419..2978661 (-) 243 WP_040985344.1 exodeoxyribonuclease VII small subunit -
  NP439_RS14650 (NP439_14650) xseA 2978639..2980009 (-) 1371 WP_040985341.1 exodeoxyribonuclease VII large subunit -
  NP439_RS14655 (NP439_14655) folD 2980006..2980860 (-) 855 WP_040985339.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 64913.48 Da        Isoelectric Point: 4.7763

>NTDB_id=712836 NP439_RS14625 WP_256706717.1 2974476..2976170(-) (recN) [Oceanobacillus jeddahense strain QA-1986 374]
MLTELSIKNFAIIEELSLSFQEGLTVLTGETGAGKSIIIDAIQLLAGARGSVDFVRHGSNKAEIEGLFFIDHEKHPIYRV
GKAYGIEISDEQIVLQRTITSSGKSICRVNSKLVTLAILREFGKTLIDIHSQHETQSLMDNEQHIDFLDLYLGDVMKDAK
KDYQEIYYRLENLKKKYRSLNDNEQEMAQRLDLLQFQQQELTEAQLIPNEDRDLEEERNQLANYEKLHQSLSDAYFALYG
EQHGLDLISQAQQSLQDGADLDPFIAEKLDSISNHYYMLEEITYDMRNYLDQLQYNPERLNEIEQRIDELNRLKRKYGPT
VEEMLDYLGRVEEEMEQITNRESHLNTLVTEIDELEKDALLEADQLHHLRKQAAEHLTKDIYRELKDLYLEKTTFSIDFE
DSAQRKLKLNGYDKILFRISTNVGEPLKDLTKIASGGELSRIMLALKKIFSKHQGITSVIFDEVDTGVSGRVAQAIAEKI
QEISIESQVLCITHLPQVAAMADTHKFIQKKEKENRTFTSVIELNDKELIEELSRMITGTKLTDTAKDHAKEMLALADRF
KKSN

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=712836 NP439_RS14625 WP_256706717.1 2974476..2976170(-) (recN) [Oceanobacillus jeddahense strain QA-1986 374]
ATGTTAACAGAATTATCGATAAAAAACTTTGCGATTATTGAGGAATTGTCCTTAAGCTTTCAAGAAGGACTTACAGTGCT
GACTGGGGAAACAGGTGCAGGAAAATCCATTATTATTGATGCGATCCAATTGTTAGCTGGAGCAAGAGGATCTGTTGACT
TTGTTCGACATGGATCGAATAAAGCAGAGATTGAGGGACTGTTTTTCATCGATCACGAAAAACATCCAATTTACCGAGTA
GGCAAAGCATATGGGATTGAAATTAGTGATGAGCAAATTGTACTCCAAAGAACAATAACTTCTTCTGGAAAAAGCATTTG
TCGTGTAAATAGTAAATTGGTGACATTGGCTATTCTCAGAGAATTCGGAAAGACATTGATTGATATTCATAGTCAGCATG
AAACACAATCGTTGATGGATAATGAGCAGCATATTGACTTTTTAGATCTTTATCTCGGAGACGTGATGAAAGATGCTAAA
AAGGATTATCAGGAAATTTATTATCGTCTGGAAAATTTGAAAAAGAAATACCGCAGTCTAAATGACAATGAACAGGAAAT
GGCACAGCGTCTTGATTTACTCCAATTCCAACAGCAGGAGTTAACTGAGGCACAGCTTATCCCTAATGAAGATAGGGATC
TGGAAGAAGAACGTAATCAGCTGGCTAACTACGAAAAACTGCATCAATCCCTTTCGGATGCGTATTTTGCTTTATATGGG
GAGCAGCATGGGTTAGATTTAATTAGTCAAGCACAGCAGTCATTACAGGATGGGGCAGATTTAGATCCCTTTATCGCTGA
AAAATTAGATAGTATATCTAATCATTATTATATGCTGGAGGAAATTACTTATGATATGCGTAATTATCTTGATCAGCTAC
AATACAATCCAGAACGGTTAAATGAAATTGAACAGCGAATCGATGAATTAAATCGATTAAAACGTAAATATGGTCCAACT
GTTGAAGAAATGTTAGACTACTTAGGCCGTGTCGAAGAAGAAATGGAACAGATTACCAATAGGGAATCCCATTTAAATAC
ACTGGTAACTGAAATCGATGAGCTGGAAAAGGATGCTTTATTGGAAGCGGATCAGCTTCATCATTTAAGAAAACAGGCTG
CTGAACATCTAACAAAGGATATTTACCGGGAATTAAAAGACCTTTATTTGGAAAAAACCACTTTTTCCATCGATTTTGAG
GATTCTGCACAACGAAAACTAAAATTAAATGGCTATGATAAAATACTATTCCGCATTTCAACCAATGTAGGTGAACCGTT
AAAAGACCTTACAAAGATTGCGTCAGGTGGGGAATTATCACGAATTATGCTTGCTTTAAAGAAGATTTTCTCCAAACATC
AAGGCATCACAAGTGTTATTTTTGATGAAGTGGATACAGGTGTCAGCGGAAGAGTTGCGCAGGCAATTGCTGAAAAAATT
CAGGAGATTTCGATTGAATCACAAGTATTATGTATTACACATCTTCCGCAAGTTGCTGCAATGGCGGATACACATAAATT
CATCCAGAAAAAAGAAAAGGAAAACCGCACTTTTACGTCTGTTATTGAATTAAATGATAAAGAACTTATTGAAGAATTAA
GCAGGATGATTACCGGAACAAAATTAACGGATACTGCAAAAGATCATGCGAAGGAAATGTTAGCCTTAGCAGACCGTTTT
AAAAAATCAAATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.113

100

0.564