Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   G6L23_RS04985 Genome accession   NZ_CP116730
Coordinates   1011076..1011798 (-) Length   240 a.a.
NCBI ID   WP_003512859.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain FPH-AT4     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1006076..1016798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L23_RS04975 (G6L23_004975) - 1007502..1009937 (+) 2436 WP_065704626.1 ComEC/Rec2 family competence protein -
  G6L23_RS04980 (G6L23_004980) - 1009954..1010637 (-) 684 WP_065704624.1 glutathione S-transferase family protein -
  G6L23_RS04985 (G6L23_004985) dinR/lexA 1011076..1011798 (-) 723 WP_003512859.1 transcriptional repressor LexA Regulator
  G6L23_RS04990 (G6L23_004990) - 1012009..1012890 (+) 882 WP_065704622.1 VOC family protein -
  G6L23_RS04995 (G6L23_004995) kdsA 1012890..1013735 (+) 846 WP_065704620.1 3-deoxy-8-phosphooctulonate synthase -
  G6L23_RS05000 (G6L23_005000) eno 1013883..1015157 (+) 1275 WP_003512870.1 phosphopyruvate hydratase -
  G6L23_RS05005 (G6L23_005005) - 1015392..1015709 (+) 318 WP_003512872.1 FtsB family cell division protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25998.93 Da        Isoelectric Point: 9.3311

>NTDB_id=712834 G6L23_RS04985 WP_003512859.1 1011076..1011798(-) (dinR/lexA) [Agrobacterium tumefaciens strain FPH-AT4]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKPKTPEPAPAPKTPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=712834 G6L23_RS04985 WP_003512859.1 1011076..1011798(-) (dinR/lexA) [Agrobacterium tumefaciens strain FPH-AT4]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCTTCGAAATCCGGCATCCACCGCCTGATAACCGCTCTCGAAGAGCGCGGGTTCA
TTCGTCGGCTACCGAATAGAGCTCGGGCGCTGGAAGTCATCAAGCTGCCCGAGGCTTATACGCCGGGCGCAAGGCCGCAG
CGCGGCTTTTCGCCAAGCGTTATCGAAGGCAGCCTTGGCAAACCCAAAACGCCGGAACCGGCCCCTGCCCCCAAGACGCC
GGCCAACGATCTGGGCGGGGCTGTCACCGTGCCGGTCATGGGCCGCATCGCTGCGGGCGTGCCGATTTCCGCCATTCAGA
ACAACACCCATGATGTGGCCGTGCCAGTAGACATGCTTGGCACGGGCGAACATTACGCTCTTGAGGTCAAGGGTGATTCG
ATGATCGAGGCCGGCATTTTCGACGGCGACACAGTCATCATCCGCAACGGCAACACCGCCAATCCCGGGGATATCGTTGT
GGCTCTGGTGGATGACGAGGAAGCCACGCTGAAGCGCTTCCGCCGCAAGGGTGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAGACCCGTATTTTCGGGCCCGACCGGGTGAAAATTCAGGGCAAGCTGGTGGGGCTGATCCGCCGCTACCAT
TGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(118-233)

LexA DNA binding domain (LexA_DNA_bind)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363