Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NP439_RS14320 Genome accession   NZ_CP101914
Coordinates   2908439..2909143 (-) Length   234 a.a.
NCBI ID   WP_276537554.1    Uniprot ID   -
Organism   Oceanobacillus jeddahense strain QA-1986 374     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2903439..2914143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP439_RS14295 (NP439_14295) - 2903520..2904233 (+) 714 WP_256706661.1 hypothetical protein -
  NP439_RS14300 (NP439_14300) - 2904243..2904932 (+) 690 WP_256706662.1 response regulator transcription factor -
  NP439_RS14305 (NP439_14305) - 2904929..2905951 (+) 1023 WP_256706663.1 HAMP domain-containing sensor histidine kinase -
  NP439_RS14310 (NP439_14310) erm 2906029..2906772 (-) 744 WP_040985236.1 23S ribosomal RNA methyltransferase Erm -
  NP439_RS14315 (NP439_14315) - 2907031..2908437 (-) 1407 WP_256706664.1 sensor histidine kinase -
  NP439_RS14320 (NP439_14320) scnR 2908439..2909143 (-) 705 WP_276537554.1 response regulator transcription factor Regulator
  NP439_RS14325 (NP439_14325) - 2909298..2910053 (+) 756 WP_040985230.1 ABC transporter ATP-binding protein -
  NP439_RS14330 (NP439_14330) - 2910050..2910775 (+) 726 WP_256706666.1 ABC transporter permease -
  NP439_RS14335 (NP439_14335) - 2910772..2911524 (+) 753 WP_256706667.1 ABC transporter permease -
  NP439_RS14340 (NP439_14340) - 2911533..2911808 (+) 276 WP_256706668.1 hypothetical protein -
  NP439_RS14345 (NP439_14345) - 2911912..2912160 (+) 249 WP_256706669.1 hypothetical protein -
  NP439_RS14350 (NP439_14350) - 2912288..2913325 (-) 1038 WP_256706670.1 serine hydrolase domain-containing protein -
  NP439_RS14355 (NP439_14355) - 2913392..2914090 (-) 699 WP_256706671.1 DJ-1/PfpI family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26559.90 Da        Isoelectric Point: 5.0752

>NTDB_id=712833 NP439_RS14320 WP_276537554.1 2908439..2909143(-) (scnR) [Oceanobacillus jeddahense strain QA-1986 374]
MNMDYIKQKRILLVDDEVALLEMVTSILKNNGFQQIRTAKTMKEAIAVANEYKPEFAILDVMLPDGDGFALLKQLREIAD
YPVLFLTARGEDEDKFTGFDSGADDYLVKPFLPKELIFRITAILRRSYKGENPHVLLKQCEIDFERAVVVKKGEDIPLTA
KEFELLSALYRQAGRIVTIDALCEAAWGENPFGYENSLMAHIRRIREKIEANPSKPVSLLTVKGLGYKLIVEEC

Nucleotide


Download         Length: 705 bp        

>NTDB_id=712833 NP439_RS14320 WP_276537554.1 2908439..2909143(-) (scnR) [Oceanobacillus jeddahense strain QA-1986 374]
ATAAATATGGATTATATTAAACAAAAACGAATTTTACTGGTGGATGATGAAGTCGCATTATTAGAAATGGTGACTTCTAT
TTTAAAGAACAATGGTTTTCAACAAATACGTACAGCGAAGACAATGAAAGAAGCAATTGCAGTAGCAAATGAGTATAAAC
CGGAATTCGCTATCCTCGACGTCATGCTACCGGATGGAGATGGGTTTGCTTTATTAAAACAATTGAGAGAGATCGCTGAT
TATCCCGTGCTTTTTCTGACTGCGCGCGGGGAAGATGAGGATAAATTTACTGGATTTGACTCAGGGGCAGATGATTATCT
TGTGAAGCCTTTTTTACCTAAGGAATTAATTTTTCGAATAACGGCGATCCTCAGGCGGAGTTACAAAGGAGAAAACCCTC
ATGTTCTTTTAAAACAGTGTGAAATTGATTTTGAACGTGCAGTTGTTGTGAAAAAAGGAGAAGATATTCCGCTCACAGCT
AAAGAATTCGAATTGCTGTCAGCATTATACCGTCAGGCAGGAAGGATTGTAACGATTGATGCACTATGTGAAGCGGCCTG
GGGAGAAAATCCATTCGGCTATGAAAACTCTTTGATGGCACATATTCGACGGATTCGTGAAAAGATAGAAGCAAACCCGT
CTAAGCCGGTATCGCTTTTAACGGTGAAAGGGTTGGGATATAAATTGATCGTGGAGGAATGCTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-229)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.782

97.863

0.487