Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   G6L23_RS01635 Genome accession   NZ_CP116730
Coordinates   345937..347757 (-) Length   606 a.a.
NCBI ID   WP_174047410.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain FPH-AT4     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 340937..352757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L23_RS01605 (G6L23_001605) - 341359..341598 (+) 240 WP_019564234.1 DUF4170 domain-containing protein -
  G6L23_RS01610 (G6L23_001610) waaA 341814..343136 (+) 1323 WP_013635565.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  G6L23_RS01615 (G6L23_001615) - 343130..343867 (+) 738 WP_065702799.1 HAD family hydrolase -
  G6L23_RS01620 (G6L23_001620) lpxK 344033..345079 (+) 1047 WP_174047384.1 tetraacyldisaccharide 4'-kinase -
  G6L23_RS01625 (G6L23_001625) - 345155..345442 (-) 288 WP_025592606.1 DUF3892 domain-containing protein -
  G6L23_RS01630 (G6L23_001630) - 345565..345786 (-) 222 WP_003519053.1 DUF2093 domain-containing protein -
  G6L23_RS01635 (G6L23_001635) hexB 345937..347757 (-) 1821 WP_174047410.1 DNA mismatch repair endonuclease MutL Machinery gene
  G6L23_RS01640 (G6L23_001640) - 348165..349784 (+) 1620 WP_049790311.1 response regulator -
  G6L23_RS01645 (G6L23_001645) - 349927..351279 (+) 1353 WP_003519050.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  G6L23_RS01650 (G6L23_001650) - 351374..352261 (-) 888 WP_065702794.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 65113.82 Da        Isoelectric Point: 6.4000

>NTDB_id=712825 G6L23_RS01635 WP_174047410.1 345937..347757(-) (hexB) [Agrobacterium tumefaciens strain FPH-AT4]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI
STTLDDIRTLGFRGEALPSIGSVAKLSITSRQHGAEQGSVISVTGGKVSEVRPAAANAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLSGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSLTLDPAFVDVNVHPAKSDVRFRDPGLVRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSNLRPSAAATWSAAASPSRPLAISGNMQFAEAVQSRFSDITMPTARAEPRE
VYEASASPSPEPSQYPLGAARAQLHQNYIVAQTEDGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPEED
CDRLMDHAAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGSVRSG
RRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=712825 G6L23_RS01635 WP_174047410.1 345937..347757(-) (hexB) [Agrobacterium tumefaciens strain FPH-AT4]
ATGGCCATCAAGCAGCTTTCAGAAACCCTCATCAACCAGATCGCCGCCGGCGAGGTCATAGAAAGACCCTCCAGCGCCAC
GAAGGAGCTGGTGGAAAACGCCATCGACGCGGGCGCAACGCGCATCGAAATCGCCACGGCGGGCGGTGGCAAGGGACTGG
TGCGCATCACCGATAACGGCTCCGGCATGTCGCCTGCCGATCTGGAGCTTGCGGTCCGACGCCATTGCACCTCGAAAATA
TCCACCACGCTTGACGATATCCGCACGCTTGGCTTTCGCGGCGAGGCCCTGCCCTCCATCGGCTCGGTTGCCAAGCTTTC
CATCACCAGCCGGCAACACGGCGCAGAACAGGGTTCGGTGATCTCCGTCACCGGCGGCAAAGTCTCCGAGGTCCGGCCCG
CCGCTGCCAATGCCGGCACCATCGTCGAGGTGCGCGACCTGTTTTTCGCGACGCCCGCACGGCTGAAATTCCTGAAAACG
GAGCGAGCGGAGGCAGCCGCCATTACCGAAGTCGTCAAGCGGATGGCAATTGCCTTTCCGCATATCCGCTTCGTGCTGTC
AGGCACCGACCGCTCCACACTTGAAATCCCCTCCACCGGCGACGATCATCTTGCCCGCATGGCGCAGATTCTCGGTGCCG
AGTTCAAGGACAACGCCATCGAAATCGATGCCGGGCGCGAGGATGTAACGCTCTCCGGTTTTGCCGGCGTGCCGACCTTC
AACCGCGGCAACTCGGCGCATCAATATGTCTTCGTCAACGGTCGCCCGGTGCAGGACAAATTGCTGTTGTCCGCCATTCG
CGGTGCCTATGCCGAAACCGTACCGCACGGGCGATATCCGGTCGCAGTGCTGTCCCTGACGCTCGATCCCGCCTTTGTCG
ACGTGAACGTGCATCCGGCGAAATCAGATGTGCGCTTTCGCGATCCCGGCCTCGTTCGCGGACTGATCGTCGGTGCGATC
CGCCAGGCGCTGACCCGCGACGGTGACAGGGCGGCGACGACTGGTGCCAGCCAGATGATGAACGCCTTTCGCCCCGGCTA
CAGCCCGTCCAATCTCCGACCGTCTGCCGCTGCGACATGGTCCGCCGCGGCCTCGCCTTCCCGACCGCTTGCCATTTCCG
GGAACATGCAATTTGCCGAGGCCGTGCAATCGCGCTTTTCCGACATCACCATGCCGACCGCGCGGGCAGAACCCCGCGAG
GTTTACGAGGCCTCGGCAAGCCCGTCGCCCGAACCGTCACAATATCCGCTCGGCGCTGCGCGGGCGCAGTTGCACCAGAA
TTACATCGTCGCGCAGACGGAAGACGGCCTCGTCATCGTCGATCAGCATGCGGCGCATGAACGGCTGGTGTTTGAGGAAA
TGCGCAATGCGCTGCATTCCAGACGCCCGCCTTCACAGGTGCTGCTCATTCCTGAGATCATCGACCTTCCCGAAGAGGAT
TGCGACCGGCTGATGGACCATGCGGCTGGTTTCGATGCACTGGGACTGGTCATCGAGCGTTTCGGGCCGGGGGCGGTCGC
GGTTCGCGAAACGCCGGCGATGCTTGGCGAGGTCAACGTGCAGGGGCTGGTGCGGCAGCTTGCCGACGAGATCGCTGAAT
GGGACGCTGCCTCCACGCTCGCCAACAAGCTGGAATATGTCGCCGCCACCATGGCTTGCCACGGCTCGGTGCGTTCAGGG
CGGCGCATGCGGCCGGAGGAGATGAACGCGCTTTTAAGGCAGATGGAAAACACGCCGGGTTCAGGACAGTGCAATCACGG
TCGTCCGACCTATATTGAGCTAAAACTTTCCGATATAGAACGTCTCTTCGGCCGAAGCTGA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(416-562)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.326

100

0.361