Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   G6L23_RS00735 Genome accession   NZ_CP116730
Coordinates   155419..155784 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain FPH-AT4     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 150419..160784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L23_RS00720 (G6L23_000720) - 152634..153011 (-) 378 WP_174047409.1 hypothetical protein -
  G6L23_RS00725 (G6L23_000725) - 153528..155123 (+) 1596 WP_236768914.1 globin-coupled sensor protein -
  G6L23_RS00730 (G6L23_000730) - 155123..155422 (+) 300 WP_013635450.1 STAS domain-containing protein -
  G6L23_RS00735 (G6L23_000735) scnR 155419..155784 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  G6L23_RS00740 (G6L23_000740) - 155801..158068 (+) 2268 WP_065703804.1 chemotaxis protein CheA -
  G6L23_RS00745 (G6L23_000745) cheR 158082..158990 (+) 909 WP_019564320.1 protein-glutamate O-methyltransferase CheR -
  G6L23_RS00750 (G6L23_000750) cheB 158987..160042 (+) 1056 WP_013635453.1 protein-glutamate O-methylesterase CheB -
  G6L23_RS00755 (G6L23_000755) cheY2 160042..160431 (+) 390 WP_003515008.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=712824 G6L23_RS00735 WP_003493773.1 155419..155784(+) (scnR) [Agrobacterium tumefaciens strain FPH-AT4]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=712824 G6L23_RS00735 WP_003493773.1 155419..155784(+) (scnR) [Agrobacterium tumefaciens strain FPH-AT4]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCAGAACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAGACAATTCAGGCCGAAGACGGCATTGAGGGTCTCGAAGTGCTGGAGCAGAGCAACCCCGACGTTATCGTGACCGATA
TCAACATGCCCCGTCTTGACGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAACGAGAAGTACCGGGCCATACCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAGAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATCGTCAAGCCGTT
CGATCCTGCGAAGCTCATCGATGCCATTGAACGCGTAACTGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364