Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PMJ88_RS30430 Genome accession   NZ_CP116725
Coordinates   6446605..6447129 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2881     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6441605..6452129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMJ88_RS30415 (PMJ88_30415) aroB 6442721..6443827 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  PMJ88_RS30420 (PMJ88_30420) aroK 6443877..6444395 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PMJ88_RS30425 (PMJ88_30425) pilQ 6444407..6446551 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  PMJ88_RS30430 (PMJ88_30430) comL/pilP 6446605..6447129 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PMJ88_RS30435 (PMJ88_30435) pilO 6447126..6447749 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PMJ88_RS30440 (PMJ88_30440) pilN 6447746..6448342 (-) 597 WP_015647905.1 type 4a pilus biogenesis protein PilN Machinery gene
  PMJ88_RS30445 (PMJ88_30445) pilM 6448342..6449406 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PMJ88_RS30450 (PMJ88_30450) - 6449591..6452059 (+) 2469 WP_025297613.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=712799 PMJ88_RS30430 WP_003095836.1 6446605..6447129(-) (comL/pilP) [Pseudomonas aeruginosa strain 2881]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=712799 PMJ88_RS30430 WP_003095836.1 6446605..6447129(-) (comL/pilP) [Pseudomonas aeruginosa strain 2881]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362