Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PMJ88_RS30440 Genome accession   NZ_CP116725
Coordinates   6447746..6448342 (-) Length   198 a.a.
NCBI ID   WP_015647905.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2881     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6442746..6453342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMJ88_RS30420 (PMJ88_30420) aroK 6443877..6444395 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PMJ88_RS30425 (PMJ88_30425) pilQ 6444407..6446551 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  PMJ88_RS30430 (PMJ88_30430) comL/pilP 6446605..6447129 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PMJ88_RS30435 (PMJ88_30435) pilO 6447126..6447749 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PMJ88_RS30440 (PMJ88_30440) pilN 6447746..6448342 (-) 597 WP_015647905.1 type 4a pilus biogenesis protein PilN Machinery gene
  PMJ88_RS30445 (PMJ88_30445) pilM 6448342..6449406 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PMJ88_RS30450 (PMJ88_30450) - 6449591..6452059 (+) 2469 WP_025297613.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22199.52 Da        Isoelectric Point: 10.0895

>NTDB_id=712801 PMJ88_RS30440 WP_015647905.1 6447746..6448342(-) (pilN) [Pseudomonas aeruginosa strain 2881]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAVENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=712801 PMJ88_RS30440 WP_015647905.1 6447746..6448342(-) (pilN) [Pseudomonas aeruginosa strain 2881]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCGTCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ATAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.143

88.384

0.364