Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NP440_RS13775 Genome accession   NZ_CP101913
Coordinates   2783319..2785013 (-) Length   564 a.a.
NCBI ID   WP_042534691.1    Uniprot ID   -
Organism   Oceanobacillus oncorhynchi strain QA-1986 526     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2778319..2790013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP440_RS13750 (NP440_13750) - 2778323..2778979 (-) 657 WP_256704799.1 recombinase family protein -
  NP440_RS13755 (NP440_13755) lexA 2779368..2779988 (+) 621 WP_042534686.1 transcriptional repressor LexA -
  NP440_RS13760 (NP440_13760) - 2780200..2780463 (+) 264 WP_042534688.1 hypothetical protein -
  NP440_RS13765 (NP440_13765) spo0A 2780735..2781517 (-) 783 WP_256704800.1 sporulation transcription factor Spo0A -
  NP440_RS13770 (NP440_13770) spoIVB 2781877..2783070 (-) 1194 WP_139089148.1 SpoIVB peptidase -
  NP440_RS13775 (NP440_13775) recN 2783319..2785013 (-) 1695 WP_042534691.1 DNA repair protein RecN Machinery gene
  NP440_RS13780 (NP440_13780) argR 2785039..2785488 (-) 450 WP_040985350.1 transcriptional regulator ArgR -
  NP440_RS13785 (NP440_13785) - 2785550..2786359 (-) 810 WP_256704801.1 TlyA family RNA methyltransferase -
  NP440_RS13790 (NP440_13790) - 2786402..2787289 (-) 888 WP_042534696.1 polyprenyl synthetase family protein -
  NP440_RS13795 (NP440_13795) - 2787291..2787533 (-) 243 WP_256704802.1 exodeoxyribonuclease VII small subunit -
  NP440_RS13800 (NP440_13800) xseA 2787511..2788881 (-) 1371 WP_042534700.1 exodeoxyribonuclease VII large subunit -
  NP440_RS13805 (NP440_13805) folD 2788878..2789732 (-) 855 WP_042534702.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 64767.06 Da        Isoelectric Point: 4.7182

>NTDB_id=712795 NP440_RS13775 WP_042534691.1 2783319..2785013(-) (recN) [Oceanobacillus oncorhynchi strain QA-1986 526]
MLTELSIKNFAIIEELSLNFQEGLTVLTGETGAGKSIIIDAIQLLAGARGSVDFVRHESNKAEIEGLFFIDHEKHPIYQV
GKAYGIEISDEQIVLQRTITSSGKSICRVNSKLVTLAILREFGKTLIDIHSQHETQSLMDNEQHIDFLDLYLGDDMKEAK
KDYQDIYNRLENLKKKYRSLNDNEQEMAQRLDLLQFQQQELTEAQLIPNEDTALEEERNQLANYERIHQSLSDAYFSLYG
EQHGLELVSHAQSALQDGADLDPFIAEKLDSISNHYYMLEELTYDIRNYLDQLQFNPERLNEIEQRMDELNRLKRKYGPT
VEEMLDYLGRVEEEIEQITNRETHLNTLVTEIDEVEKDALLEADQLHHLRKQAAETLTNDIHRELKDLYLEKTTFSIDFE
DSTQRKLKSNGYDKILFRISTNVGEPLKDLTKIASGGELSRIMLALKKIFSKHQGITSVIFDEVDTGVSGRVAQAIAEKI
HEISLESQVLCITHLPQVAAMADTHKFIQKKEKENRTFTSVIELNNTELIEELSRMITGTKLTDTAKEHAKEMLTLADRF
KKSN

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=712795 NP440_RS13775 WP_042534691.1 2783319..2785013(-) (recN) [Oceanobacillus oncorhynchi strain QA-1986 526]
ATGTTAACTGAATTATCTATAAAAAACTTTGCGATTATTGAAGAATTATCCTTAAACTTTCAAGAAGGCCTTACTGTTTT
GACGGGGGAGACTGGTGCAGGAAAATCGATTATCATTGATGCTATCCAATTATTAGCCGGAGCAAGAGGTTCTGTAGACT
TTGTTCGACATGAATCGAATAAAGCGGAGATTGAAGGATTATTTTTCATCGATCACGAAAAGCACCCTATTTACCAAGTA
GGAAAAGCATATGGGATTGAAATCAGTGATGAACAAATTGTACTTCAGCGGACCATAACCTCCTCTGGAAAAAGCATCTG
CCGTGTAAATAGTAAATTAGTGACACTGGCTATTCTCCGGGAATTTGGAAAAACATTGATTGATATCCATAGTCAGCACG
AGACGCAATCGCTGATGGATAATGAGCAGCATATTGATTTTTTAGATCTCTATCTTGGAGATGACATGAAGGAAGCAAAA
AAGGATTATCAGGATATTTATAACCGTCTGGAAAATCTGAAGAAAAAGTACCGCAGCCTGAATGACAATGAGCAGGAGAT
GGCACAGCGCCTGGATCTGCTCCAATTCCAACAGCAGGAATTAACAGAAGCACAGCTTATCCCGAATGAGGATACGGCGC
TTGAAGAAGAGCGCAATCAGCTTGCAAATTATGAAAGGATACATCAATCTCTTTCGGATGCTTATTTTTCTTTATATGGC
GAGCAGCATGGATTAGAATTAGTCAGCCACGCACAATCAGCTTTACAGGACGGAGCAGATTTAGATCCTTTTATTGCTGA
AAAATTGGACAGTATATCTAATCATTATTATATGCTGGAAGAACTCACGTATGATATTCGCAATTATCTTGACCAGCTGC
AATTTAATCCGGAGCGCCTGAATGAGATTGAACAGCGGATGGATGAATTGAACAGATTAAAGCGTAAATACGGTCCAACG
GTGGAAGAAATGTTAGACTACTTAGGACGCGTTGAAGAAGAAATCGAACAGATTACAAATCGGGAAACGCATTTAAATAC
ACTTGTAACAGAAATTGATGAGGTTGAAAAGGATGCTTTATTAGAAGCAGATCAGCTTCATCACTTACGAAAACAAGCCG
CGGAAACATTAACGAACGATATCCACCGGGAATTAAAAGACCTCTATTTAGAAAAGACGACCTTTTCCATTGATTTTGAG
GATTCAACGCAGCGGAAGCTGAAATCAAACGGCTATGATAAAATACTTTTCCGCATTTCCACCAATGTCGGCGAGCCTTT
AAAAGACCTCACAAAAATAGCTTCAGGAGGAGAATTATCAAGAATCATGCTTGCTTTGAAGAAGATTTTCTCAAAGCATC
AGGGCATTACGAGTGTTATTTTTGATGAAGTGGACACCGGAGTCAGCGGAAGAGTCGCACAGGCAATTGCTGAAAAAATC
CATGAAATATCGCTGGAATCACAGGTTCTGTGTATTACACATCTTCCGCAGGTCGCTGCTATGGCAGATACGCATAAATT
TATTCAGAAAAAGGAAAAGGAAAATCGCACTTTTACTTCTGTTATTGAATTAAATAATACGGAACTGATTGAGGAATTAA
GCCGGATGATTACTGGAACAAAATTAACAGATACAGCAAAAGAACATGCGAAAGAAATGTTAACATTGGCAGATCGTTTT
AAAAAATCAAATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.593

100

0.559