Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   K6J73_RS01730 Genome accession   NZ_AP018780
Coordinates   350005..350301 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain CHBN-IV-1 isolate 13H36     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 345005..355301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J73_RS09510 - 346503..346721 (+) 219 WP_343213441.1 PT domain-containing protein -
  K6J73_RS01720 (CHBNIV1_03310) - 346626..349560 (+) 2935 Protein_336 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K6J73_RS01725 (CHBNIV1_03320) - 349830..350012 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  K6J73_RS01730 (CHBNIV1_03330) HI0659 350005..350301 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  K6J73_RS01735 (CHBNIV1_03340) - 350485..352401 (+) 1917 WP_221253268.1 ABC transporter ATP-binding protein -
  K6J73_RS01740 (CHBNIV1_03350) - 352411..352947 (+) 537 WP_221253269.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  K6J73_RS01745 (CHBNIV1_03360) - 352963..353514 (+) 552 WP_075913443.1 Sua5/YciO/YrdC/YwlC family protein -
  K6J73_RS01750 (CHBNIV1_03370) aroE 353518..354336 (+) 819 WP_221253270.1 shikimate dehydrogenase -
  K6J73_RS01755 (CHBNIV1_03380) - 354333..354890 (+) 558 WP_075913439.1 DNA-3-methyladenine glycosylase I -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=71272 K6J73_RS01730 WP_005650837.1 350005..350301(+) (HI0659) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=71272 K6J73_RS01730 WP_005650837.1 350005..350301(+) (HI0659) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment