Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NP431_RS12150 Genome accession   NZ_CP101905
Coordinates   2666734..2667252 (-) Length   172 a.a.
NCBI ID   WP_014232962.1    Uniprot ID   A0AAN0Y3W6
Organism   Vibrio natriegens strain 14048     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2661734..2672252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP431_RS12125 (NP431_12125) rimM 2661816..2662364 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  NP431_RS12130 (NP431_12130) rpsP 2662395..2662643 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  NP431_RS12135 (NP431_12135) ffh 2662852..2664234 (-) 1383 WP_014232959.1 signal recognition particle protein -
  NP431_RS12140 (NP431_12140) - 2664459..2665253 (+) 795 WP_014232960.1 inner membrane protein YpjD -
  NP431_RS12145 (NP431_12145) - 2665372..2666649 (+) 1278 WP_014232961.1 HlyC/CorC family transporter -
  NP431_RS12150 (NP431_12150) luxS 2666734..2667252 (-) 519 WP_014232962.1 S-ribosylhomocysteine lyase Regulator
  NP431_RS12155 (NP431_12155) - 2667322..2667927 (-) 606 WP_014232963.1 hypothetical protein -
  NP431_RS12160 (NP431_12160) gshA 2667952..2669520 (-) 1569 WP_020333954.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=712642 NP431_RS12150 WP_014232962.1 2666734..2667252(-) (luxS) [Vibrio natriegens strain 14048]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=712642 NP431_RS12150 WP_014232962.1 2666734..2667252(-) (luxS) [Vibrio natriegens strain 14048]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCTGCTGTGCGAGTCGCGAAAACCATGCAAAC
CCCAAAAGGGGACACCATTACTGTCTTCGATTTACGCTTTACTGCACCAAACAAAGATATCCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACCTTTACGCTGGCTTTATGCGTAGCCATCTAAACGGTGACAGCGTTGAGATCATTGATATTTCACCA
ATGGGATGTCGTACTGGATTCTACATGAGCCTGATCGGTACGCCTTCAGAGCAACAAGTCGCGGATGCTTGGATTGCATC
AATGGAAGATGTACTGAAAGTAGAAAGTCAGAACAAAATCCCTGAGCTAAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCACTGGATGAAGCAAAGCAAATTGCGAAAAACATTCTGGACGCGGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
CTGCCTGAGTCGATGTTAAAAGAACTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86