Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | NP431_RS06255 | Genome accession | NZ_CP101905 |
| Coordinates | 1375798..1377219 (-) | Length | 473 a.a. |
| NCBI ID | WP_020333046.1 | Uniprot ID | A0AAN1CW98 |
| Organism | Vibrio natriegens strain 14048 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1369898..1412416 | 1375798..1377219 | within | 0 |
Gene organization within MGE regions
Location: 1369898..1412416
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NP431_RS06220 (NP431_06220) | ihfA | 1369898..1370194 (+) | 297 | WP_005462650.1 | integration host factor subunit alpha | - |
| NP431_RS06225 (NP431_06225) | - | 1370312..1371088 (-) | 777 | WP_020333040.1 | phosphoribosylglycinamide formyltransferase | - |
| NP431_RS06230 (NP431_06230) | - | 1371404..1372054 (+) | 651 | WP_020333041.1 | thiopurine S-methyltransferase | - |
| NP431_RS06235 (NP431_06235) | purT | 1372146..1373321 (-) | 1176 | WP_020333042.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| NP431_RS06240 (NP431_06240) | cdd | 1373469..1374356 (-) | 888 | WP_020333043.1 | cytidine deaminase | - |
| NP431_RS06245 (NP431_06245) | - | 1374686..1375363 (-) | 678 | WP_014231625.1 | LrgB family protein | - |
| NP431_RS06250 (NP431_06250) | - | 1375365..1375739 (-) | 375 | WP_020333045.1 | CidA/LrgA family protein | - |
| NP431_RS06255 (NP431_06255) | sbcB | 1375798..1377219 (-) | 1422 | WP_020333046.1 | exodeoxyribonuclease I | Machinery gene |
| NP431_RS06260 (NP431_06260) | - | 1377402..1378598 (+) | 1197 | WP_020333047.1 | site-specific integrase | - |
| NP431_RS06265 (NP431_06265) | - | 1378745..1379590 (+) | 846 | WP_020333048.1 | hypothetical protein | - |
| NP431_RS06270 (NP431_06270) | - | 1379703..1380746 (+) | 1044 | WP_020333049.1 | hypothetical protein | - |
| NP431_RS06275 (NP431_06275) | - | 1380836..1381159 (+) | 324 | WP_020333050.1 | hypothetical protein | - |
| NP431_RS06280 (NP431_06280) | - | 1381516..1382025 (+) | 510 | WP_061778632.1 | hypothetical protein | - |
| NP431_RS06285 (NP431_06285) | - | 1382265..1382570 (-) | 306 | WP_020333054.1 | AlpA family transcriptional regulator | - |
| NP431_RS06290 (NP431_06290) | - | 1382611..1382769 (-) | 159 | WP_020333055.1 | hypothetical protein | - |
| NP431_RS06295 (NP431_06295) | - | 1382744..1383145 (-) | 402 | WP_020333056.1 | hypothetical protein | - |
| NP431_RS06300 (NP431_06300) | - | 1383142..1383384 (-) | 243 | WP_020333057.1 | hypothetical protein | - |
| NP431_RS06305 (NP431_06305) | - | 1383546..1383818 (-) | 273 | WP_020333058.1 | hypothetical protein | - |
| NP431_RS06310 (NP431_06310) | - | 1384144..1384572 (-) | 429 | WP_020333059.1 | hypothetical protein | - |
| NP431_RS06315 (NP431_06315) | - | 1384793..1385461 (-) | 669 | WP_020333060.1 | LexA family transcriptional regulator | - |
| NP431_RS06320 (NP431_06320) | - | 1385552..1385785 (+) | 234 | WP_020333061.1 | helix-turn-helix transcriptional regulator | - |
| NP431_RS06325 (NP431_06325) | - | 1385832..1386380 (+) | 549 | WP_020333062.1 | toxin YdaT family protein | - |
| NP431_RS06330 (NP431_06330) | - | 1386450..1386581 (+) | 132 | WP_255201246.1 | hypothetical protein | - |
| NP431_RS06335 (NP431_06335) | - | 1386578..1387366 (+) | 789 | WP_236614642.1 | helix-turn-helix domain-containing protein | - |
| NP431_RS06340 (NP431_06340) | - | 1387363..1388094 (+) | 732 | WP_020333064.1 | ATP-binding protein | - |
| NP431_RS06345 (NP431_06345) | - | 1388095..1388676 (+) | 582 | WP_020333065.1 | hypothetical protein | - |
| NP431_RS06350 (NP431_06350) | - | 1388852..1389472 (+) | 621 | WP_020333066.1 | hypothetical protein | - |
| NP431_RS06355 (NP431_06355) | - | 1389604..1390287 (+) | 684 | WP_020333068.1 | GIY-YIG nuclease family protein | - |
| NP431_RS06360 (NP431_06360) | - | 1390645..1391082 (+) | 438 | WP_020333069.1 | hypothetical protein | - |
| NP431_RS06365 (NP431_06365) | - | 1391136..1391813 (+) | 678 | WP_020333071.1 | hypothetical protein | - |
| NP431_RS06370 (NP431_06370) | - | 1391943..1392224 (+) | 282 | WP_020333072.1 | hypothetical protein | - |
| NP431_RS06375 (NP431_06375) | - | 1392190..1392648 (+) | 459 | WP_020333073.1 | hypothetical protein | - |
| NP431_RS06380 (NP431_06380) | - | 1392690..1392875 (+) | 186 | WP_020333074.1 | hypothetical protein | - |
| NP431_RS06385 (NP431_06385) | - | 1392995..1394209 (+) | 1215 | WP_020333075.1 | tyrosine-type recombinase/integrase | - |
| NP431_RS06390 (NP431_06390) | - | 1394648..1395217 (+) | 570 | WP_020333076.1 | terminase small subunit | - |
| NP431_RS06395 (NP431_06395) | - | 1395171..1397165 (+) | 1995 | WP_231113042.1 | terminase gpA endonuclease subunit | - |
| NP431_RS06400 (NP431_06400) | - | 1397159..1397686 (+) | 528 | WP_020333078.1 | hypothetical protein | - |
| NP431_RS06405 (NP431_06405) | - | 1397686..1399239 (+) | 1554 | WP_020333079.1 | phage portal protein | - |
| NP431_RS06410 (NP431_06410) | - | 1399211..1401181 (+) | 1971 | WP_020333080.1 | phage major capsid protein | - |
| NP431_RS06415 (NP431_06415) | - | 1401242..1401433 (+) | 192 | WP_020333081.1 | hypothetical protein | - |
| NP431_RS06420 (NP431_06420) | - | 1401426..1401704 (+) | 279 | WP_020333082.1 | hypothetical protein | - |
| NP431_RS06425 (NP431_06425) | - | 1401701..1402333 (+) | 633 | WP_020333083.1 | phage tail protein | - |
| NP431_RS06430 (NP431_06430) | gpU | 1402323..1402769 (+) | 447 | WP_020333084.1 | phage tail terminator protein | - |
| NP431_RS06435 (NP431_06435) | - | 1402772..1403272 (+) | 501 | WP_020333085.1 | phage tail tube protein | - |
| NP431_RS06440 (NP431_06440) | - | 1403278..1403718 (+) | 441 | WP_020333086.1 | phage minor tail protein domain-containing protein | - |
| NP431_RS06445 (NP431_06445) | - | 1403784..1404068 (+) | 285 | WP_020333088.1 | hypothetical protein | - |
| NP431_RS06450 (NP431_06450) | - | 1404049..1406280 (+) | 2232 | WP_020333090.1 | hypothetical protein | - |
| NP431_RS06455 (NP431_06455) | - | 1406280..1406876 (+) | 597 | WP_020333091.1 | hypothetical protein | - |
| NP431_RS06460 (NP431_06460) | - | 1406873..1407424 (+) | 552 | WP_020333092.1 | DUF2163 domain-containing protein | - |
| NP431_RS06465 (NP431_06465) | - | 1407428..1412416 (+) | 4989 | WP_020333093.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54415.60 Da Isoelectric Point: 4.7761
>NTDB_id=712631 NP431_RS06255 WP_020333046.1 1375798..1377219(-) (sbcB) [Vibrio natriegens strain 14048]
MNNSEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGIIPQKAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS
MNNSEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGIIPQKAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=712631 NP431_RS06255 WP_020333046.1 1375798..1377219(-) (sbcB) [Vibrio natriegens strain 14048]
ATGAATAACTCAGAACAGCCGACATTCTTCTTCTTTGACTACGAAACTTGGGGAACAAACCCTGCAAAAGATCGTCCGAG
TCAATTTGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCTTTAATTACTGGGATTATCCCACAAAAGGCGGTGCAGGAAGGTCTGCCTGAGCCT
GAGTTCATTGCTAAAATTCATGCCGAGTTATCCAAACCCAATACCACCAGTTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACGCGTTACACCTGTTACCGCAACTTTATTGACCCGTATGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCCCTTCGACCAGAAGGCGTTGAATGGCCAGAAAATGAAGAAGGCTTTCCT
AGCTTCAAACTTGAGCATTTGTCTGTTGCCAACGGTATTGAACACAGCAATGCACACGATGCCATGGCTGACGTTATCGC
AACGATCGAGATGGCGAAGAAAGTTAAAGCCGCTCAGCCTAAGTTGTTCGATTACTTCTTCTCCATGCGTCAAAAGCGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTCTGATGCACGTTTCTGGCATGTTAGGACGCGAGTGTCAGTAC
ACAAGCTGGATTGTGCCTGTTGCATGGCATCCGACGAACAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
ACCTATCCTAGAGCTGTCTGCGGAAGAGCTGCACGAAAGGTTGTACACCAAGCGAGAAGATCTCGGTGATTTGCTGCCTG
TGCCAGTTAAACTTGTTCACTTGAATAAGTGCCCTATTCTGGCACCAGCGAAAACACTGACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAACAATGCTTGAACAATCTGGCTCTGTTGCGTCAGCACCCAGAGATTCGAGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCACATTTGAAAAAAGTGATGATGTGGATACTCAACTGTACGATGGCTTCTTCTCTCCGGCGG
ATCGCGCAGCGATGGATATTATTCGCGAGACCGACCCGAATAATCTGGCCGCTCTGGATATTGAGTTCGATGACAAGCGC
ATTAAACCACTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGCACGTTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTAGAGAGCCTAGCCTCTTAA
ATGAATAACTCAGAACAGCCGACATTCTTCTTCTTTGACTACGAAACTTGGGGAACAAACCCTGCAAAAGATCGTCCGAG
TCAATTTGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCTTTAATTACTGGGATTATCCCACAAAAGGCGGTGCAGGAAGGTCTGCCTGAGCCT
GAGTTCATTGCTAAAATTCATGCCGAGTTATCCAAACCCAATACCACCAGTTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACGCGTTACACCTGTTACCGCAACTTTATTGACCCGTATGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCCCTTCGACCAGAAGGCGTTGAATGGCCAGAAAATGAAGAAGGCTTTCCT
AGCTTCAAACTTGAGCATTTGTCTGTTGCCAACGGTATTGAACACAGCAATGCACACGATGCCATGGCTGACGTTATCGC
AACGATCGAGATGGCGAAGAAAGTTAAAGCCGCTCAGCCTAAGTTGTTCGATTACTTCTTCTCCATGCGTCAAAAGCGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTCTGATGCACGTTTCTGGCATGTTAGGACGCGAGTGTCAGTAC
ACAAGCTGGATTGTGCCTGTTGCATGGCATCCGACGAACAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
ACCTATCCTAGAGCTGTCTGCGGAAGAGCTGCACGAAAGGTTGTACACCAAGCGAGAAGATCTCGGTGATTTGCTGCCTG
TGCCAGTTAAACTTGTTCACTTGAATAAGTGCCCTATTCTGGCACCAGCGAAAACACTGACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAACAATGCTTGAACAATCTGGCTCTGTTGCGTCAGCACCCAGAGATTCGAGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCACATTTGAAAAAAGTGATGATGTGGATACTCAACTGTACGATGGCTTCTTCTCTCCGGCGG
ATCGCGCAGCGATGGATATTATTCGCGAGACCGACCCGAATAATCTGGCCGCTCTGGATATTGAGTTCGATGACAAGCGC
ATTAAACCACTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGCACGTTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTAGAGAGCCTAGCCTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
79.281 |
100 |
0.793 |