Detailed information NTG0712622

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PMJ92_RS07750
• Genome accession: NZ_CP116724
• Coordinates: 1648461..1649465 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2880
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1643461..1654465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PMJ92_RS07720 (PMJ92_07720)	fghA	1643553..1644404 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PMJ92_RS07725 (PMJ92_07725)	ispF	1644475..1644948 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PMJ92_RS07730 (PMJ92_07730)	truD	1644945..1646012 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PMJ92_RS07735 (PMJ92_07735)	surE	1646000..1646749 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PMJ92_RS07740 (PMJ92_07740)	-	1646782..1647417 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PMJ92_RS07745 (PMJ92_07745)	-	1647463..1648356 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PMJ92_RS07750 (PMJ92_07750)	rpoS	1648461..1649465 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PMJ92_RS07755 (PMJ92_07755)	fdxA	1649892..1650215 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PMJ92_RS07760 (PMJ92_07760)	mutS	1650282..1652849 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PMJ92_RS07765 (PMJ92_07765)	-	1652975..1653982 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=712622 PMJ92_RS07750 WP_003113871.1 1648461..1649465(+) (rpoS) [Pseudomonas aeruginosa strain 2880]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=712622 PMJ92_RS07750 WP_003113871.1 1648461..1649465(+) (rpoS) [Pseudomonas aeruginosa strain 2880]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653