Detailed information NTG0712621

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NP431_RS01300
• Genome accession: NZ_CP101905
• Coordinates: 283786..284793 (-)
• Length: 335 a.a.
• NCBI ID: WP_014230660.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain 14048
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 278786..289793

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NP431_RS01270 (NP431_01270)	zapB	278910..279152 (+)	243	WP_014230654.1	cell division protein ZapB	-
NP431_RS01275 (NP431_01275)	rraA	279226..279768 (-)	543	WP_014230655.1	ribonuclease E activity regulator RraA	-
NP431_RS01280 (NP431_01280)	-	279845..280762 (-)	918	WP_020335798.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NP431_RS01285 (NP431_01285)	hslU	281018..282349 (-)	1332	WP_014230657.1	HslU--HslV peptidase ATPase subunit	-
NP431_RS01290 (NP431_01290)	hslV	282373..282924 (-)	552	WP_020335799.1	ATP-dependent protease subunit HslV	-
NP431_RS01295 (NP431_01295)	-	283079..283624 (-)	546	WP_014230659.1	SPOR domain-containing protein	-
NP431_RS01300 (NP431_01300)	cytR	283786..284793 (-)	1008	WP_014230660.1	DNA-binding transcriptional regulator CytR	Regulator
NP431_RS01305 (NP431_01305)	priA	285129..287333 (-)	2205	WP_020335801.1	primosomal protein N'	-
NP431_RS01310 (NP431_01310)	rpmE	287631..287852 (+)	222	WP_014230662.1	50S ribosomal protein L31	-
NP431_RS01315 (NP431_01315)	rpsJ	288311..288622 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
NP431_RS01320 (NP431_01320)	rplC	288637..289266 (+)	630	WP_014230663.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36842.30 Da
• Isoelectric Point: 6.2447

>NTDB_id=712621 NP431_RS01300 WP_014230660.1 283786..284793(-) (cytR) [Vibrio natriegens strain 14048]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKDPQYSIVTEFSFDGGAKAVRKLLELAEPPTA
IFCHCDTMAIGAIQEAKKLGFRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TNLIVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=712621 NP431_RS01300 WP_014230660.1 283786..284793(-) (cytR) [Vibrio natriegens strain 14048]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTATCTACCGCGACGGTATCTCGAGCATTAATGAATCCGGAGAA
AGTCTCCTCTTCAACCAGAAAAAGAGTTGAAGACGCGGTACTCGAAGCAGGTTACTCACCAAATTCATTAGCGCGTAATT
TACGACGAAACGAATCGAAAACCATTGTTACGATCGTTCCTGACATCTGCGACCCTTACTTTTCCGAAATCATCCGTGGT
ATCGAAGATGCGGCCATGGAGCACGGCTACCTGGTTTTGCTGGGAGACAGTGGCCAGCAGAAGAAACGCGAAAGCTCATT
CGTAAACCTGGTATTTACAAAGCAAGCAGACGGGATGCTGCTACTTGGTACTGACTTACCGTTTGATGTTAGTAAGCCAG
AGCAGAAAAACCTGCCACCAATGGTCATGGCGTGTGAATTTGCGCCTGAGCTCGAACTGCCAACCGTTCATATCGATAAC
CTGACTTCTGCCTTTGAAGCGGTCAATTATCTGACTCAGCTTGGCCACAAACGTATTGCGCAAATTTCAGGTCCTGATAC
CGCGGTATTGTGCCAATTCCGTCAACAAGGTTACCAGCAAGCACTGCGTCGTGCAGGGATCAATAAAGACCCGCAATACA
GTATTGTCACCGAGTTCTCTTTTGACGGCGGAGCAAAAGCAGTGCGTAAGCTGCTGGAACTAGCGGAACCACCAACCGCG
ATTTTCTGCCACTGTGACACGATGGCAATCGGCGCCATTCAAGAAGCGAAAAAACTCGGCTTCCGTGTACCACAAGATCT
ATCGGTTGTAGGTTTTGATGACATCAATTTCGCGCAGTACTGTGATCCACCGTTAACGACGATCTCTCAGCCTCGTTACG
AGATTGGCCGACAAGCGATGCTAATGATGTTAGAGCTTTTAAAAGGCCACGATGTGCATTCTGGATCTCGTCTTCTGGAG
ACTAACCTGATTGTGCGCGGAAGTGCTGCGCCTCCTCAACGAGCGTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	97.612	100	0.976
cytR	Vibrio cholerae C6706	89.222	99.701	0.89