Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NPS25_RS07490 Genome accession   NZ_CP101904
Coordinates   1451084..1451368 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain Ba-0321     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1446084..1456368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS25_RS07470 (NPS25_07470) - 1447327..1448235 (+) 909 WP_039251596.1 ketopantoate reductase family protein -
  NPS25_RS07475 (NPS25_07475) - 1448267..1449499 (-) 1233 WP_007409644.1 aminopeptidase -
  NPS25_RS07480 (NPS25_07480) - 1449600..1449734 (-) 135 WP_003154559.1 protein YkpC -
  NPS25_RS07485 (NPS25_07485) mreBH 1449806..1450813 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  NPS25_RS07490 (NPS25_07490) abrB 1451084..1451368 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NPS25_RS07495 (NPS25_07495) - 1451541..1452845 (+) 1305 WP_007409646.1 ATP-binding protein -
  NPS25_RS07500 (NPS25_07500) - 1452847..1453674 (+) 828 WP_064115430.1 gamma-glutamylcyclotransferase -
  NPS25_RS07505 (NPS25_07505) ktrC 1453715..1454380 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  NPS25_RS07510 (NPS25_07510) ade 1454529..1456262 (+) 1734 WP_256683782.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=712573 NPS25_RS07490 WP_003154557.1 1451084..1451368(+) (abrB) [Bacillus velezensis strain Ba-0321]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=712573 NPS25_RS07490 WP_003154557.1 1451084..1451368(+) (abrB) [Bacillus velezensis strain Ba-0321]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543