Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NPS25_RS07380 Genome accession   NZ_CP101904
Coordinates   1430584..1431180 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain Ba-0321     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1425584..1436180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS25_RS07350 (NPS25_07350) - 1425797..1426252 (+) 456 WP_060675292.1 flavodoxin -
  NPS25_RS07355 (NPS25_07355) dapD 1426334..1427044 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NPS25_RS07360 (NPS25_07360) - 1427115..1428239 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  NPS25_RS07365 (NPS25_07365) - 1428300..1428545 (+) 246 WP_003154596.1 YkuS family protein -
  NPS25_RS07370 (NPS25_07370) - 1428579..1429385 (-) 807 WP_060675394.1 mechanosensitive ion channel family protein -
  NPS25_RS07375 (NPS25_07375) - 1429674..1430132 (+) 459 WP_061890572.1 TlpA disulfide reductase family protein -
  NPS25_RS07380 (NPS25_07380) rok 1430584..1431180 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  NPS25_RS07385 (NPS25_07385) - 1431201..1432193 (-) 993 WP_012117448.1 hypothetical protein -
  NPS25_RS07390 (NPS25_07390) - 1432339..1432941 (+) 603 WP_015239766.1 molybdenum cofactor guanylyltransferase -
  NPS25_RS07395 (NPS25_07395) - 1432993..1434012 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  NPS25_RS07400 (NPS25_07400) glp 1434030..1435322 (+) 1293 WP_256683781.1 gephyrin-like molybdotransferase Glp -
  NPS25_RS07405 (NPS25_07405) mobB 1435283..1435804 (+) 522 WP_015417376.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=712572 NPS25_RS07380 WP_012117447.1 1430584..1431180(+) (rok) [Bacillus velezensis strain Ba-0321]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=712572 NPS25_RS07380 WP_012117447.1 1430584..1431180(+) (rok) [Bacillus velezensis strain Ba-0321]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843