Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NPX80_RS00450 Genome accession   NZ_CP101858
Coordinates   98725..99354 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LP50-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 93725..104354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPX80_RS00430 (NPX80_00430) ycbZ 94115..95875 (-) 1761 WP_000156526.1 Lon protease family protein -
  NPX80_RS00435 (NPX80_00435) matP 96061..96513 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  NPX80_RS00440 (NPX80_00440) ompA 96588..97640 (-) 1053 WP_000750419.1 porin OmpA -
  NPX80_RS00445 (NPX80_00445) sulA 97997..98506 (-) 510 WP_063100170.1 SOS-induced cell division inhibitor SulA -
  NPX80_RS00450 (NPX80_00450) sxy/tfoX 98725..99354 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NPX80_RS00455 (NPX80_00455) yccS 99317..101479 (-) 2163 WP_000875044.1 YccS family putative transporter -
  NPX80_RS00460 (NPX80_00460) yccF 101489..101935 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NPX80_RS00465 (NPX80_00465) helD 102058..104112 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=712441 NPX80_RS00450 WP_000839153.1 98725..99354(+) (sxy/tfoX) [Escherichia coli strain LP50-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=712441 NPX80_RS00450 WP_000839153.1 98725..99354(+) (sxy/tfoX) [Escherichia coli strain LP50-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAGGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1