Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   K6J62_RS01690 Genome accession   NZ_AP018779
Coordinates   338919..339215 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain CHBN-III-8 isolate 10H15     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 333919..344215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J62_RS08765 - 335653..335703 (+) 51 Protein_326 hypothetical protein -
  K6J62_RS08780 - 335751..336135 (+) 385 Protein_327 TonB-dependent receptor plug domain-containing protein -
  K6J62_RS01680 (CHBNIII8_03220) - 336343..338598 (+) 2256 WP_246588190.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K6J62_RS01685 (CHBNIII8_03230) - 338705..338926 (+) 222 WP_038439526.1 type II toxin-antitoxin system RelE/ParE family toxin -
  K6J62_RS01690 (CHBNIII8_03240) HI0659 338919..339215 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  K6J62_RS01695 (CHBNIII8_03250) - 339382..341298 (+) 1917 WP_110431987.1 ABC transporter ATP-binding protein -
  K6J62_RS01700 (CHBNIII8_03260) - 341308..341844 (+) 537 WP_110431986.1 type I DNA topoisomerase -
  K6J62_RS01705 (CHBNIII8_03270) - 341860..342411 (+) 552 WP_110431985.1 Sua5/YciO/YrdC/YwlC family protein -
  K6J62_RS01710 (CHBNIII8_03280) aroE 342415..343233 (+) 819 WP_110431984.1 shikimate dehydrogenase -
  K6J62_RS01715 (CHBNIII8_03290) - 343230..343787 (+) 558 WP_110431983.1 DNA-3-methyladenine glycosylase I -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=71237 K6J62_RS01690 WP_005650837.1 338919..339215(+) (HI0659) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=71237 K6J62_RS01690 WP_005650837.1 338919..339215(+) (HI0659) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment