Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PMJ85_RS23855 Genome accession   NZ_CP116718
Coordinates   5042510..5043124 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain 2858     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5037510..5048124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMJ85_RS23835 (PMJ85_23835) - 5038953..5039582 (+) 630 WP_015649141.1 CsiV family protein -
  PMJ85_RS23840 (PMJ85_23840) - 5039628..5040365 (-) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  PMJ85_RS23845 (PMJ85_23845) nagZ 5040377..5041375 (-) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  PMJ85_RS23850 (PMJ85_23850) psrA 5041577..5042278 (-) 702 WP_015649142.1 transcriptional regulator PsrA -
  PMJ85_RS23855 (PMJ85_23855) dinR/lexA 5042510..5043124 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  PMJ85_RS23860 (PMJ85_23860) sulA 5043136..5043621 (+) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  PMJ85_RS23865 (PMJ85_23865) - 5043643..5043876 (-) 234 WP_003109483.1 hypothetical protein -
  PMJ85_RS23870 (PMJ85_23870) - 5044082..5044600 (-) 519 WP_003113979.1 DUF6586 family protein -
  PMJ85_RS23875 (PMJ85_23875) topA 5044707..5047313 (-) 2607 WP_003091201.1 type I DNA topoisomerase -
  PMJ85_RS23880 (PMJ85_23880) - 5047404..5047667 (-) 264 WP_003109484.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=712239 PMJ85_RS23855 WP_003091196.1 5042510..5043124(+) (dinR/lexA) [Pseudomonas aeruginosa strain 2858]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=712239 PMJ85_RS23855 WP_003091196.1 5042510..5043124(+) (dinR/lexA) [Pseudomonas aeruginosa strain 2858]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGTATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387