Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NPA43_RS09965 Genome accession   NZ_CP101833
Coordinates   1990108..1990743 (+) Length   211 a.a.
NCBI ID   WP_256499674.1    Uniprot ID   -
Organism   Bacillus pumilus strain NDY-10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985108..1995743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS09925 (NPA43_09925) - 1985279..1986397 (+) 1119 WP_230030542.1 NADH-dependent flavin oxidoreductase -
  NPA43_RS09930 (NPA43_09930) - 1986452..1986958 (-) 507 WP_099728453.1 PTS glucose transporter subunit IIA -
  NPA43_RS09935 (NPA43_09935) - 1987127..1987546 (+) 420 WP_099728452.1 Hsp20/alpha crystallin family protein -
  NPA43_RS09940 (NPA43_09940) - 1987566..1988015 (-) 450 WP_099728451.1 YppG family protein -
  NPA43_RS09945 (NPA43_09945) - 1988119..1988499 (-) 381 WP_230030313.1 YppE family protein -
  NPA43_RS09950 (NPA43_09950) - 1988548..1988784 (-) 237 WP_099728449.1 DUF5446 family protein -
  NPA43_RS09955 (NPA43_09955) sspM 1988978..1989082 (+) 105 WP_099728448.1 acid-soluble spore protein SspM -
  NPA43_RS09960 (NPA43_09960) - 1989105..1990061 (-) 957 WP_230030315.1 DUF2515 domain-containing protein -
  NPA43_RS09965 (NPA43_09965) recU 1990108..1990743 (+) 636 WP_256499674.1 Holliday junction resolvase RecU Machinery gene
  NPA43_RS09970 (NPA43_09970) - 1990763..1993456 (+) 2694 WP_230030316.1 PBP1A family penicillin-binding protein -
  NPA43_RS09975 (NPA43_09975) - 1993493..1994002 (-) 510 WP_256498726.1 YpoC family protein -
  NPA43_RS09980 (NPA43_09980) nth 1993999..1994661 (-) 663 WP_099728055.1 endonuclease III -
  NPA43_RS09985 (NPA43_09985) - 1994679..1995383 (-) 705 WP_099728056.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24351.68 Da        Isoelectric Point: 9.6240

>NTDB_id=712232 NPA43_RS09965 WP_256499674.1 1990108..1990743(+) (recU) [Bacillus pumilus strain NDY-10]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHEHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQK
QKGRKSISKEELLDAGHLMTLGYSPRIDYIKVVETLHFSDESEQYLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=712232 NPA43_RS09965 WP_256499674.1 1990108..1990743(+) (recU) [Bacillus pumilus strain NDY-10]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAATCGCGGGATGACGCTTGAAGCTGATTTAAATGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTAAATGTGGATTATCCGAAAAGAAGCGCTGCTGTCATCAAAGAAGCTTAC
TTTAAACAATCATCCACAACAGACTATAACGGGGTGTATAAAGGGCGCTATATCGACTTTGAAGCAAAAGAAACCAAAAG
CACAACCTCGTTTCCGCTCAAAAATTTTCATGAGCACCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGTCCGCTTCTGACCTCTTCTTCTTTTGGGAGCGCCAGAAG
CAAAAAGGCCGTAAATCCATTAGCAAAGAGGAATTGTTGGACGCTGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGCAATATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

70.792

95.735

0.678