Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NPA43_RS07670 Genome accession   NZ_CP101833
Coordinates   1530322..1531224 (+) Length   300 a.a.
NCBI ID   WP_256499558.1    Uniprot ID   -
Organism   Bacillus pumilus strain NDY-10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1525322..1536224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS07650 (NPA43_07650) - 1525988..1527724 (+) 1737 WP_256499557.1 glycosyltransferase -
  NPA43_RS07655 (NPA43_07655) - 1527721..1527996 (+) 276 WP_099725876.1 FlhB-like flagellar biosynthesis protein -
  NPA43_RS07660 (NPA43_07660) sucC 1528173..1529333 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  NPA43_RS07665 (NPA43_07665) sucD 1529356..1530258 (+) 903 WP_099725875.1 succinate--CoA ligase subunit alpha -
  NPA43_RS07670 (NPA43_07670) dprA 1530322..1531224 (+) 903 WP_256499558.1 DNA-processing protein DprA Machinery gene
  NPA43_RS07675 (NPA43_07675) topA 1531418..1533493 (+) 2076 WP_099725873.1 type I DNA topoisomerase -
  NPA43_RS07680 (NPA43_07680) trmFO 1533564..1534868 (+) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NPA43_RS07685 (NPA43_07685) xerC 1534931..1535848 (+) 918 WP_099725871.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34191.66 Da        Isoelectric Point: 9.2781

>NTDB_id=712227 NPA43_RS07670 WP_256499558.1 1530322..1531224(+) (dprA) [Bacillus pumilus strain NDY-10]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHYKQDRSLQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPRTLKHIYDPPPVLFLKGNVTYLNEEKGLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHLYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRGVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=712227 NPA43_RS07670 WP_256499558.1 1530322..1531224(+) (dprA) [Bacillus pumilus strain NDY-10]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTTGATCCTGAGTTATATATAAATGAAGAAACACATCATTACAAACAGGATCGATCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGAACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTAACATATTTAAATGAAGAAAAAGGTTTAGGTGTAGTAGGCACGCGTGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAACTTGTTAAGGAAGATTGGATGATTGTCAGTGGCTTAGCAAAAGGAATCGATGGACTTGCACAC
AAGGAGTGCATCAGAAAAAAAGGGAAAACCATTGGTGTTGTAGCTGGCGGTTTCCAGCATTTATATCCAAAGGAACATGT
GCAAATGGCTCAATACATGGGAGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCACT
TTCCAATGAGAAATCGTTTAATTAGTGCACTAACAAAAGGAACCATCGTGATCCAGTGTAAAGAAAAGAGCGGTTCGCTC
ATTACAGCGTATCAGGCGCTTGAGCAAGGAAAAGAAGTGTTTGCGGTGGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCTAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCTACGAAGGATATTTTAGAGGAATTCTCCTTCCGTGGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.401

95.667

0.53
  dprA Legionella pneumophila strain ERS1305867

37.582

100

0.383