Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NPA43_RS06820 Genome accession   NZ_CP101833
Coordinates   1363233..1363511 (+) Length   92 a.a.
NCBI ID   WP_099728755.1    Uniprot ID   A0A2G8IPJ9
Organism   Bacillus pumilus strain NDY-10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1358233..1368511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS06795 (NPA43_06795) - 1358328..1358603 (-) 276 WP_249704676.1 hypothetical protein -
  NPA43_RS06800 (NPA43_06800) - 1358747..1360366 (+) 1620 WP_034324367.1 ABC-F family ATP-binding cassette domain-containing protein -
  NPA43_RS06805 (NPA43_06805) - 1360403..1361635 (-) 1233 WP_099728753.1 aminopeptidase -
  NPA43_RS06810 (NPA43_06810) - 1361743..1361874 (-) 132 WP_003210922.1 protein YkpC -
  NPA43_RS06815 (NPA43_06815) mreBH 1361949..1362956 (-) 1008 WP_099728754.1 rod-share determining protein MreBH -
  NPA43_RS06820 (NPA43_06820) abrB 1363233..1363511 (+) 279 WP_099728755.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NPA43_RS06825 (NPA43_06825) - 1363657..1364949 (+) 1293 WP_099728756.1 ATP-binding protein -
  NPA43_RS06830 (NPA43_06830) - 1364972..1365808 (+) 837 WP_099728757.1 gamma-glutamylcyclotransferase -
  NPA43_RS06835 (NPA43_06835) - 1365846..1366514 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  NPA43_RS06840 (NPA43_06840) ade 1366776..1368506 (+) 1731 WP_256499517.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10304.98 Da        Isoelectric Point: 4.6535

>NTDB_id=712226 NPA43_RS06820 WP_099728755.1 1363233..1363511(+) (abrB) [Bacillus pumilus strain NDY-10]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPQGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=712226 NPA43_RS06820 WP_099728755.1 1363233..1363511(+) (abrB) [Bacillus pumilus strain NDY-10]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGATGAACTAGGGCGTATTGTTATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCAATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCTCAAGGTGTTT
GTCTCATGACTGGTGAGATTACTTCTGAGAATCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGAGCAGAA
CTACTGCTAAAAGAGCTGCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IPJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543