Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NPA43_RS06710 Genome accession   NZ_CP101833
Coordinates   1343255..1343836 (+) Length   193 a.a.
NCBI ID   WP_099728736.1    Uniprot ID   -
Organism   Bacillus pumilus strain NDY-10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338255..1348836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS06685 (NPA43_06685) - 1338916..1340094 (+) 1179 WP_230031167.1 N-acetyldiaminopimelate deacetylase -
  NPA43_RS06690 (NPA43_06690) - 1340145..1340387 (+) 243 WP_003211408.1 YkuS family protein -
  NPA43_RS06695 (NPA43_06695) - 1340411..1341219 (-) 809 Protein_1268 mechanosensitive ion channel family protein -
  NPA43_RS06700 (NPA43_06700) ahpA 1341492..1342034 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  NPA43_RS06705 (NPA43_06705) - 1342314..1342772 (+) 459 WP_099728735.1 TlpA disulfide reductase family protein -
  NPA43_RS06710 (NPA43_06710) rok 1343255..1343836 (+) 582 WP_099728736.1 hypothetical protein Regulator
  NPA43_RS06715 (NPA43_06715) - 1343900..1344817 (-) 918 WP_099728737.1 sigmaE regulated sporulation protein -
  NPA43_RS06720 (NPA43_06720) - 1344901..1345482 (+) 582 WP_180275570.1 molybdenum cofactor guanylyltransferase -
  NPA43_RS06725 (NPA43_06725) - 1345512..1346528 (+) 1017 WP_249704666.1 thiazole biosynthesis adenylyltransferase ThiF -
  NPA43_RS06730 (NPA43_06730) glp 1346538..1347815 (+) 1278 WP_180275571.1 gephyrin-like molybdotransferase Glp -
  NPA43_RS06735 (NPA43_06735) mobB 1347797..1348321 (+) 525 WP_099728741.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  NPA43_RS06740 (NPA43_06740) - 1348318..1348809 (+) 492 WP_099728742.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21813.79 Da        Isoelectric Point: 9.7309

>NTDB_id=712225 NPA43_RS06710 WP_099728736.1 1343255..1343836(+) (rok) [Bacillus pumilus strain NDY-10]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVADTKKEVRTERKTDSLPVLAELAAQEMRSYQQ
PAQSQSNATSPLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=712225 NPA43_RS06710 WP_099728736.1 1343255..1343836(+) (rok) [Bacillus pumilus strain NDY-10]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAACTAAATGAAGCAGAAGTGAAGGTCATTCGTGAATATCA
AATTGAACGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGGCAGATACAAAAAAAG
AAGTGCGTACAGAGAGAAAGACGGATTCATTGCCTGTATTAGCTGAGCTAGCTGCACAAGAAATGAGAAGCTACCAGCAG
CCGGCACAATCACAATCAAACGCTACATCACCTTTAGGAACAGGTCAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCTCGACCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATCAAAACGTTAA
AGCGTCATAATGCGGCAATTAAAAGCTCAGAGCTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATCCCAAATATG
ACCACGTTTATGCAAAGCTTAATTAAAATGTACCCTGAAGTGAAGAAGCCTTATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

80

98.446

0.788