Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NPA43_RS06585 Genome accession   NZ_CP101833
Coordinates   1323428..1323889 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus pumilus strain NDY-10     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1318428..1328889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS06560 (NPA43_06560) - 1319032..1319916 (+) 885 WP_256499513.1 cation diffusion facilitator family transporter -
  NPA43_RS06565 (NPA43_06565) - 1319980..1320135 (-) 156 WP_155762186.1 hypothetical protein -
  NPA43_RS06570 (NPA43_06570) - 1320434..1320973 (+) 540 WP_099728668.1 RDD family protein -
  NPA43_RS06575 (NPA43_06575) - 1321100..1322410 (+) 1311 WP_249704659.1 MFS transporter -
  NPA43_RS06580 (NPA43_06580) - 1322484..1323392 (+) 909 WP_256499514.1 chemotaxis protein -
  NPA43_RS06585 (NPA43_06585) kre 1323428..1323889 (-) 462 WP_008356877.1 YkyB family protein Regulator
  NPA43_RS19235 - 1324138..1324395 (-) 258 WP_371930227.1 tyrosine-type recombinase/integrase -
  NPA43_RS06590 (NPA43_06590) - 1324755..1324892 (+) 138 WP_256499515.1 hypothetical protein -
  NPA43_RS06595 (NPA43_06595) - 1325477..1325692 (-) 216 WP_034324450.1 hypothetical protein -
  NPA43_RS06600 (NPA43_06600) - 1325885..1326070 (+) 186 WP_230031165.1 hypothetical protein -
  NPA43_RS06605 (NPA43_06605) - 1326307..1327584 (-) 1278 WP_099728663.1 MFS transporter -
  NPA43_RS06610 (NPA43_06610) - 1327658..1328155 (-) 498 WP_099728662.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=712224 NPA43_RS06585 WP_008356877.1 1323428..1323889(-) (kre) [Bacillus pumilus strain NDY-10]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=712224 NPA43_RS06585 WP_008356877.1 1323428..1323889(-) (kre) [Bacillus pumilus strain NDY-10]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTACAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAGGCGAATATGTCATTAAACCGAGCAAAACAAATCCTTCAAACGTATGTTGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACGAAACCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765