Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K6J60_RS05385 Genome accession   NZ_AP018778
Coordinates   1042815..1045181 (+) Length   788 a.a.
NCBI ID   WP_221267207.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-7 isolate 15H01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1037815..1050181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J60_RS05360 (CHBNIII7_10020) - 1038164..1039462 (-) 1299 WP_221267206.1 N-acetylmuramoyl-L-alanine amidase -
  K6J60_RS05365 (CHBNIII7_10030) tsaE 1039470..1039946 (-) 477 WP_118807839.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  K6J60_RS05370 (CHBNIII7_10040) folK 1040022..1040504 (-) 483 WP_118807840.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K6J60_RS05375 (CHBNIII7_10050) pcnB 1040513..1041871 (-) 1359 WP_118807880.1 polynucleotide adenylyltransferase PcnB -
  K6J60_RS05380 (CHBNIII7_10060) dksA 1042119..1042556 (-) 438 WP_005630220.1 RNA polymerase-binding protein DksA -
  K6J60_RS05385 (CHBNIII7_10070) rec2 1042815..1045181 (+) 2367 WP_221267207.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K6J60_RS05390 (CHBNIII7_10080) msbA 1045222..1046985 (+) 1764 WP_118807842.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K6J60_RS05395 (CHBNIII7_10090) lpxK 1047058..1048056 (+) 999 WP_118807843.1 tetraacyldisaccharide 4'-kinase -
  K6J60_RS05400 (CHBNIII7_10100) kdsB 1048127..1048891 (+) 765 WP_118807844.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89502.20 Da        Isoelectric Point: 10.0350

>NTDB_id=71222 K6J60_RS05385 WP_221267207.1 1042815..1045181(+) (rec2) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLSQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLENNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKISDVLSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKTIWSIYQQTNTAHLIAISGLHIGLAM
GIGFCLARVVQVFCPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPIQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNGTMFFWQLANKLAEGSTGLISVFQGNWLTVSFNLALFLTALCAGIFMLIIWRIYREPE
ASSSTWKIKRPRFFTLNLSKPLLKNERINVLRCSFGIILMCFMILLFKQFSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKNSVLLTGDAEAKNEQIFARTLGKINVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTKFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=71222 K6J60_RS05385 WP_221267207.1 1042815..1045181(+) (rec2) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTCGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATCACAACAAGCTCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGAGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTCGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAG
GGGATTACGGCTGTTGGAACGGTAAAAAGTGCGGTGAAAATTTCGGATGTTTTATCATTGCGAGCAGAAAAATTGCAACA
AGTAAAGAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATTGCCTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAACCATTTGGTCAATTTACCAACAAACCAATACCGCGCATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGGATTGGATTTTGCTTGGCGCGTGTTGTGCAAGTCTTTTGCCCCACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGTGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTATTTATTCAAATAATGAGGCGACATTATTCGCCCATTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGGGCGGTTGGGTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGCCCTTTTTCACCAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACACCTTTGCAACTTTTTCTATTTAATGGCTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCACAATGTTTTT
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAAGTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGCGTATTTATCGAGAACCAGAG
GCTTCATCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTGAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCGATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTTAGTAAGCCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGGAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
TTGCATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGAATAGCGTTTTGCTAACTGGCGACGCTGAAGCAAAAAATGAGCAAATTTTTGCCCGCACTTTAGGCAAAATCA
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACTGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAA
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(204-473)

Domain of unknown function (DUF4131) (DUF4131)

(28-171)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

96.954

100

0.97

Multiple sequence alignment