Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NPA43_RS05110 Genome accession   NZ_CP101833
Coordinates   1039418..1040368 (+) Length   316 a.a.
NCBI ID   WP_099728126.1    Uniprot ID   A0A2G8IRD9
Organism   Bacillus pumilus strain NDY-10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1034418..1045368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS05085 (NPA43_05085) - 1034981..1035340 (+) 360 WP_230030949.1 cupin domain-containing protein -
  NPA43_RS05090 (NPA43_05090) - 1035642..1036121 (+) 480 WP_099728124.1 hypothetical protein -
  NPA43_RS05095 (NPA43_05095) - 1036153..1037592 (-) 1440 WP_256499445.1 PLP-dependent aminotransferase family protein -
  NPA43_RS05100 (NPA43_05100) - 1037739..1038908 (+) 1170 WP_249705421.1 MFS transporter -
  NPA43_RS05105 (NPA43_05105) - 1038974..1039249 (+) 276 WP_099728168.1 barstar family protein -
  NPA43_RS05110 (NPA43_05110) ceuB 1039418..1040368 (+) 951 WP_099728126.1 ABC transporter permease Machinery gene
  NPA43_RS05115 (NPA43_05115) - 1040361..1041311 (+) 951 WP_099728127.1 iron chelate uptake ABC transporter family permease subunit -
  NPA43_RS05120 (NPA43_05120) - 1041302..1042060 (+) 759 WP_099728128.1 ABC transporter ATP-binding protein -
  NPA43_RS05125 (NPA43_05125) - 1042083..1043027 (+) 945 WP_256499446.1 siderophore ABC transporter substrate-binding protein -
  NPA43_RS05130 (NPA43_05130) - 1043168..1044124 (+) 957 WP_230030945.1 LCP family protein -
  NPA43_RS05135 (NPA43_05135) - 1044284..1044646 (-) 363 WP_099728131.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34795.14 Da        Isoelectric Point: 9.8502

>NTDB_id=712213 NPA43_RS05110 WP_099728126.1 1039418..1040368(+) (ceuB) [Bacillus pumilus strain NDY-10]
MKLYQLSLLFVCLACASLFVGVQDLSILQLFHLTDGQMHTLLSSRIPRLMSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILAAMLVFTHASPLTKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSAISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAVNLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=712213 NPA43_RS05110 WP_099728126.1 1039418..1040368(+) (ceuB) [Bacillus pumilus strain NDY-10]
ATGAAGTTGTATCAATTAAGTTTGTTATTTGTGTGTTTGGCATGTGCATCACTGTTTGTCGGTGTACAGGATCTGTCTAT
TTTACAGCTGTTTCATTTAACAGATGGACAAATGCATACCTTATTGTCAAGTCGCATCCCACGGCTGATGAGTATTGTGC
TTGCTGGCATGAGCCTTAGTTTATGCGGCTTTATTATGCAAAGCATGACAAGGAATAAATTTGTTTCACCAACCACAGCA
GGAACAATGGATTGGGCCAAGCTTGGTATTTTAGCAGCTATGCTCGTTTTTACACATGCGAGCCCGCTCACGAAAATGGG
CATCGCATTTTTATTTACTCTAGCTGGCAATCTCCTATTCTTAAAAATCCTTCGCCATATTAAGGTGAACGATACGATCT
ATGTACCGTTAGTCGGATTAATGTTTGGCGGGATCGTCAGTGCAATATCTACGTTTATCGCCTATAAATATGATCTGATC
CAAAACGTATCTGCATGGCTTCAAGGGGATTTTTCTCTTATTGTTCAGGGGCGTTATGAACTGCTCTATGTGAGTGTTCC
ACTTTTGATCATTGCGTATTTATATGCTGACCGCTTTACAGTGGCTGGTATGGGCGAGAGCTTTGCTGTCAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGTTTGGTGATCGTTTCGATGATTACGTCTGTCACCATTTTAACAGTCGGAATG
CTGCCATTTCTCGGCTTAATCATTCCTAATATTGTATCGATCTATCGAGGCGATCACTTGAAAAAAAGCCTCCCGCATAC
AGCCTTACTAGGTGCCATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTATCCATATGAAATTTCAGTTG
GGCTCATGGTAGGCATCATCGGAAGTGCGATCTTCCTGTACATGCTATTAAGGAGGAAACGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IRD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.667

94.937

0.5