Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NPA43_RS05065 Genome accession   NZ_CP101833
Coordinates   1031266..1031844 (+) Length   192 a.a.
NCBI ID   WP_099728120.1    Uniprot ID   A0A2G8IRI4
Organism   Bacillus pumilus strain NDY-10     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1026266..1036844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS05045 (NPA43_05045) - 1026762..1028123 (-) 1362 WP_370461122.1 globin-coupled sensor protein -
  NPA43_RS05050 (NPA43_05050) - 1028149..1029681 (-) 1533 WP_256499443.1 FAD-dependent oxidoreductase -
  NPA43_RS05055 (NPA43_05055) - 1029823..1030683 (+) 861 WP_099728166.1 SDR family oxidoreductase -
  NPA43_RS05060 (NPA43_05060) - 1030746..1030976 (-) 231 WP_003210924.1 IDEAL domain-containing protein -
  NPA43_RS05065 (NPA43_05065) comK 1031266..1031844 (+) 579 WP_099728120.1 competence protein ComK Regulator
  NPA43_RS05070 (NPA43_05070) - 1032016..1033122 (+) 1107 WP_249705418.1 D-TA family PLP-dependent enzyme -
  NPA43_RS05075 (NPA43_05075) - 1033153..1033824 (+) 672 WP_249705419.1 transcriptional regulator -
  NPA43_RS05080 (NPA43_05080) - 1033852..1034961 (+) 1110 WP_256499444.1 threonine synthase -
  NPA43_RS05085 (NPA43_05085) - 1034981..1035340 (+) 360 WP_230030949.1 cupin domain-containing protein -
  NPA43_RS05090 (NPA43_05090) - 1035642..1036121 (+) 480 WP_099728124.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22396.46 Da        Isoelectric Point: 8.7996

>NTDB_id=712212 NPA43_RS05065 WP_099728120.1 1031266..1031844(+) (comK) [Bacillus pumilus strain NDY-10]
MSGISETPLDSYVINQTTMAVLPIEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTMVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=712212 NPA43_RS05065 WP_099728120.1 1031266..1031844(+) (comK) [Bacillus pumilus strain NDY-10]
GTGTCAGGAATTAGCGAAACACCTTTAGATTCATACGTCATTAATCAAACAACGATGGCGGTCCTTCCAATTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTCGAATTAAAGCCGCTGCAAATCATTGAGCGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGTATTTCTCACAAGCCTCCG
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAATCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATATATTCATACCTTCCAAGAATCATCCCTCGGGGACACGATGGTCACGTTTACAAATGAGCAAACGGTCAAATTAG
ATGTCTCATATAAATCATTTGAGAGTCAGGTACACCGGACAGCGTATCTCCGAACGAAATTTCAAGATCGTCTTGATGGA
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTTGTATACGATTTTATTTTAAGAGA
ACTTCGTAACAGATATTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IRI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62