Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   NPA43_RS04120 Genome accession   NZ_CP101833
Coordinates   858153..858944 (+) Length   263 a.a.
NCBI ID   WP_099727609.1    Uniprot ID   -
Organism   Bacillus pumilus strain NDY-10     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 853153..863944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS04085 (NPA43_04085) - 853238..853789 (+) 552 WP_099727616.1 thioredoxin family protein -
  NPA43_RS04090 (NPA43_04090) - 854127..854594 (+) 468 WP_099727615.1 DUF393 domain-containing protein -
  NPA43_RS04095 (NPA43_04095) - 854631..855887 (-) 1257 WP_099727614.1 transcriptional regulator -
  NPA43_RS04100 (NPA43_04100) - 856160..856747 (+) 588 WP_249705304.1 nitroreductase -
  NPA43_RS04105 (NPA43_04105) - 856782..856937 (-) 156 WP_099727612.1 YfhD family protein -
  NPA43_RS04110 (NPA43_04110) - 856999..857109 (-) 111 WP_099727611.1 YfhE family protein -
  NPA43_RS04115 (NPA43_04115) - 857162..858058 (-) 897 WP_099727610.1 TIGR01777 family oxidoreductase -
  NPA43_RS04120 (NPA43_04120) recX 858153..858944 (+) 792 WP_099727609.1 recombination regulator RecX Regulator
  NPA43_RS04125 (NPA43_04125) - 858948..859262 (+) 315 WP_105928239.1 YfhH family protein -
  NPA43_RS04130 (NPA43_04130) - 859284..859457 (-) 174 WP_008360604.1 YpzG family protein -
  NPA43_RS04135 (NPA43_04135) - 859483..859632 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  NPA43_RS04140 (NPA43_04140) - 859749..860021 (+) 273 WP_099727607.1 YfhJ family protein -
  NPA43_RS04145 (NPA43_04145) - 860323..861306 (+) 984 WP_099727606.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30637.02 Da        Isoelectric Point: 6.6676

>NTDB_id=712208 NPA43_RS04120 WP_099727609.1 858153..858944(+) (recX) [Bacillus pumilus strain NDY-10]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEAEIIEIQFGDSVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDTIEQSLSQYPDDLQLEE
AVNQVLKLVRKEKNRSAKEIEQRIKLQLQRKGFSFAIIDKALQEAYDGQEEEKEEEALLYMLEKAKRKVGYDGSFEKKMK
VKQFLYRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=712208 NPA43_RS04120 WP_099727609.1 858153..858944(+) (recX) [Bacillus pumilus strain NDY-10]
ATGCCTTATATTACAAAAATTTCTGCTCAGAAAAACAATACAGAGCGCGTGAACATCTTTCTTGATGAAAAGTACGCCTT
TAGCGTTGATCTAGATGTGCTCGTTCAGCACGATTTGAAAAAGGGGAAAGAGCTGGACGAAGCAGAGATCATTGAGATTC
AATTCGGTGATTCTGTCAAAAAAGGATTTCAGCAGGCTGTCGATTATTTATCTTACCGCATGAGATCAGTGAAAGAAGTC
ACCGATTATTTAACGAAAAAAGAAATACCAGCACCTGCTATTAGTGAAATTATACACAAATTAAAGCATTATAAGTATGT
AAATGATCTTGAATTTGCAGAAGCATATGTGAGCACCCACCGGAAAACGAACAGCAAAGGGCCTTCCGTCCTGAAAAAAG
AATTAAAGCTGAAAGGCATAGACGATGACACCATTGAACAATCGCTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCCGTCAATCAGGTTCTCAAGCTGGTGAGAAAAGAAAAGAATCGTTCTGCAAAAGAGATCGAGCAGCGCATCAAGCTTCA
GCTTCAACGAAAGGGATTTTCGTTTGCGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAAG
AAGAAGAAGCCCTCCTGTATATGCTAGAGAAGGCAAAGCGCAAGGTAGGATATGACGGATCTTTTGAAAAGAAGATGAAA
GTGAAGCAATTTTTATACCGAAAAGGCTTTGATCTCGATACTATTGATCACGTGTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

61.977

100

0.62