Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NPA43_RS00255 Genome accession   NZ_CP101833
Coordinates   47255..47545 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain NDY-10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42255..52545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS00215 (NPA43_00215) - 42288..42617 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  NPA43_RS00220 (NPA43_00220) - 42630..43070 (+) 441 WP_230031690.1 YaaR family protein -
  NPA43_RS00225 (NPA43_00225) holB 43082..44071 (+) 990 WP_256499205.1 DNA polymerase III subunit delta' -
  NPA43_RS00230 (NPA43_00230) - 44074..44901 (+) 828 WP_099728338.1 stage 0 sporulation family protein -
  NPA43_RS00235 (NPA43_00235) yabA 44916..45269 (+) 354 WP_230031692.1 DNA replication initiation control protein YabA -
  NPA43_RS00240 (NPA43_00240) - 45325..46068 (+) 744 WP_256499206.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NPA43_RS00245 (NPA43_00245) - 46055..46354 (+) 300 WP_099728336.1 GIY-YIG nuclease family protein -
  NPA43_RS00250 (NPA43_00250) rsmI 46329..47210 (+) 882 WP_099728335.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NPA43_RS00255 (NPA43_00255) abrB 47255..47545 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NPA43_RS00260 (NPA43_00260) metG 48065..50065 (+) 2001 WP_249705133.1 methionine--tRNA ligase -
  NPA43_RS00265 (NPA43_00265) - 50147..50914 (+) 768 WP_230031695.1 TatD family hydrolase -
  NPA43_RS00270 (NPA43_00270) - 51159..52361 (+) 1203 WP_256499208.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=712202 NPA43_RS00255 WP_087975202.1 47255..47545(-) (abrB) [Bacillus pumilus strain NDY-10]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=712202 NPA43_RS00255 WP_087975202.1 47255..47545(-) (abrB) [Bacillus pumilus strain NDY-10]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGTCGTAC
ACTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938