Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NM897_RS08560 Genome accession   NZ_CP101819
Coordinates   1723768..1724718 (+) Length   316 a.a.
NCBI ID   WP_341959776.1    Uniprot ID   -
Organism   Planococcus maritimus strain KRIBB-KS-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1718768..1729718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM897_RS08545 (NM897_08550) - 1719868..1720581 (+) 714 WP_182092589.1 VOC family protein -
  NM897_RS08550 (NM897_08555) hflX 1720680..1721951 (+) 1272 WP_182092590.1 GTPase HflX -
  NM897_RS08555 (NM897_08560) - 1722127..1723005 (+) 879 WP_341959774.1 DUF6612 family protein -
  NM897_RS08560 (NM897_08565) ceuB 1723768..1724718 (+) 951 WP_341959776.1 ABC transporter permease Machinery gene
  NM897_RS08565 (NM897_08570) - 1724711..1725661 (+) 951 WP_182092593.1 iron chelate uptake ABC transporter family permease subunit -
  NM897_RS08570 (NM897_08575) - 1725658..1726419 (+) 762 WP_182092594.1 ABC transporter ATP-binding protein -
  NM897_RS08575 (NM897_08580) - 1726549..1727190 (+) 642 WP_341959778.1 phosphatase PAP2 family protein -
  NM897_RS08580 (NM897_08585) - 1727548..1728831 (-) 1284 WP_341959780.1 ammonium transporter -
  NM897_RS08585 (NM897_08590) - 1728844..1729185 (-) 342 WP_182092597.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34888.28 Da        Isoelectric Point: 10.1518

>NTDB_id=712136 NM897_RS08560 WP_341959776.1 1723768..1724718(+) (ceuB) [Planococcus maritimus strain KRIBB-KS-1]
MKKRILLPILILLSLISLFVGVSSISPLDLLDFQSEETQIFLVSRFPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMIEKMAVAFLFALAGTFLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMVMKGSYELLYISVPVFIIAYMYANRFTVAGMGEDFSKNLGLKYRSVVNIGLTLVALITATVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLVCDILGRVLIYPYEITISLMVGVIGSFIFLIMLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=712136 NM897_RS08560 WP_341959776.1 1723768..1724718(+) (ceuB) [Planococcus maritimus strain KRIBB-KS-1]
ATGAAAAAACGTATTTTACTACCCATATTGATCCTTCTATCGCTCATCTCCCTGTTTGTCGGAGTCAGCAGCATCAGTCC
CCTGGATCTTCTGGATTTTCAATCGGAAGAAACGCAGATCTTCCTCGTCAGCCGTTTTCCTCGGTTAGTCGCGATTTTAC
TTGCGGGAGCAGGCATGAGCATGGCAGGGCTCATTATGCAGCAATTGAGCCGCAATAAATTCGTCTCGCCAACGACTGCC
GGAACGCTCGATGCAACGCGCCTCGGGATTCTCGTGTCGATGCTATTGTTTGCGAACGCGTCGATGATCGAGAAAATGGC
GGTAGCATTCTTGTTCGCACTCGCCGGAACGTTCTTATTCATGCAAATTCTCAACCGCATCAAATTCAAAGATGCCATCT
TTATTCCGCTTATCGGCTTGATGTTCGGCAATATCCTGTCTTCGATCACCACATTTTTCGCCTACCGCGCGGACGTTATC
CAAAACATGTCGGCTTGGCTGCAGGGCGATTTCTCGATGGTCATGAAAGGCAGCTATGAACTTCTTTACATCAGTGTACC
GGTTTTCATCATTGCCTATATGTACGCCAACCGCTTTACAGTGGCGGGGATGGGGGAAGACTTCTCGAAAAATCTGGGAT
TGAAATACCGCAGTGTCGTTAACATCGGTTTGACTTTAGTTGCGCTCATTACGGCGACTGTTGTCTTGACGGTCGGCATG
ATCCCATTTCTTGGCTTGATCATTCCGAATATCGTCTCGATTTTCAAAGGGGACCATCTTCAGAAAACCTTGCCGCATAC
GGCGATGCTCGGGGCTATTTTCTTGCTGGTATGTGACATTCTCGGGCGGGTTTTGATTTATCCGTATGAGATCACCATCA
GCCTGATGGTCGGCGTTATCGGAAGCTTTATCTTCCTGATCATGTTGTTTAGGAGGAAAGCTTATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.674

99.051

0.532