Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NM897_RS06665 Genome accession   NZ_CP101819
Coordinates   1371216..1372598 (+) Length   460 a.a.
NCBI ID   WP_341963029.1    Uniprot ID   -
Organism   Planococcus maritimus strain KRIBB-KS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1366216..1377598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM897_RS06640 (NM897_06645) - 1366234..1366479 (+) 246 WP_182092151.1 hypothetical protein -
  NM897_RS06645 (NM897_06650) - 1366619..1367104 (+) 486 WP_182092152.1 CtsR family transcriptional regulator -
  NM897_RS06650 (NM897_06655) - 1367101..1367634 (+) 534 WP_182092153.1 UvrB/UvrC motif-containing protein -
  NM897_RS06655 (NM897_06660) - 1367624..1368715 (+) 1092 WP_182092154.1 protein arginine kinase -
  NM897_RS06660 (NM897_06665) - 1368712..1371156 (+) 2445 WP_182092155.1 ATP-dependent Clp protease ATP-binding subunit -
  NM897_RS06665 (NM897_06670) radA 1371216..1372598 (+) 1383 WP_341963029.1 DNA repair protein RadA Machinery gene
  NM897_RS06670 (NM897_06675) - 1372701..1373801 (+) 1101 WP_341963030.1 PIN/TRAM domain-containing protein -
  NM897_RS06675 (NM897_06680) ispD 1373814..1374509 (+) 696 WP_341963031.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NM897_RS06680 (NM897_06685) ispF 1374506..1375006 (+) 501 WP_058382195.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NM897_RS06685 (NM897_06690) gltX 1375049..1376512 (+) 1464 WP_341963035.1 glutamate--tRNA ligase -
  NM897_RS06690 (NM897_06695) cysE 1376822..1377496 (+) 675 WP_182092160.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50239.04 Da        Isoelectric Point: 7.1425

>NTDB_id=712135 NM897_RS06665 WP_341963029.1 1371216..1372598(+) (radA) [Planococcus maritimus strain KRIBB-KS-1]
MAKKKIKFICQSCGYESAKWMGKCPGCAAWNTMTEETEVAAPKGTRGAFQHSAPQIAQKATPINSIETKEEPRTKTEMEE
LNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQVSALLAKAGKKVLYISGEESIRQTKMRAERLNAVSGDLLIFAETNLELI
HHTIEEVEPDFVIVDSIQTVYHPEVTSAPGSVTQVRESTAELMRVAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLY
FEGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSSGTAGSTVVASMEGTRPILVEIQALVTPSS
FNYPKRMATGIDQNRVSLLMAVLEKRVGLMLQSQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDIAPKVDDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFKRAIIPKSNMGGWDFPEGIRVVGVETINEALKELFPQQ

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=712135 NM897_RS06665 WP_341963029.1 1371216..1372598(+) (radA) [Planococcus maritimus strain KRIBB-KS-1]
ATGGCAAAGAAAAAAATAAAGTTCATCTGCCAATCCTGCGGTTATGAGTCTGCAAAATGGATGGGGAAATGCCCAGGCTG
TGCAGCATGGAATACCATGACAGAAGAAACGGAAGTGGCAGCACCGAAAGGCACCAGAGGCGCATTCCAGCATAGCGCAC
CACAAATCGCCCAAAAAGCCACACCAATCAATTCGATTGAGACAAAAGAAGAACCACGCACGAAAACGGAAATGGAAGAG
CTCAACCGTGTACTCGGCGGCGGGATTGTGTCCGGTTCACTCGTGCTGATCGGCGGAGATCCAGGGATCGGGAAGTCCAC
TTTACTCCTGCAAGTATCTGCGCTGCTAGCAAAAGCAGGCAAGAAAGTGTTGTATATTTCAGGTGAGGAATCCATTCGCC
AAACAAAAATGCGGGCAGAGCGGCTTAATGCGGTGTCGGGAGATTTATTGATTTTTGCAGAAACCAATTTGGAATTGATC
CATCACACAATTGAAGAGGTAGAGCCGGATTTCGTCATTGTCGACTCAATTCAGACGGTCTATCATCCAGAGGTGACATC
TGCTCCGGGCAGTGTGACACAGGTGCGCGAGAGTACAGCCGAATTGATGCGGGTGGCAAAAACAAAGAATATCGCGATTT
TCCTCGTCGGCCACGTGACAAAAGAAGGCCAAATCGCCGGGCCGCGCATTTTGGAACATATGGTGGATACGGTGCTGTAT
TTTGAAGGCGAGCGCCACCACACGTATCGAATTTTGCGCAGTGTTAAAAACCGTTTTGGTTCGACGAATGAAATTGCGAT
TTTCGAAATGCTGCAAGGCGGGTTAAAGGAAGTGTTGAACCCATCCGAGCTGTTTTTACAGGAACGCTCAAGCGGCACAG
CGGGATCGACGGTGGTCGCTTCGATGGAAGGGACACGGCCAATTTTGGTAGAGATTCAGGCATTAGTTACACCATCAAGC
TTTAATTACCCGAAACGCATGGCGACAGGGATTGATCAGAACCGGGTGTCGTTATTGATGGCGGTGCTTGAAAAACGAGT
TGGTTTGATGCTGCAGTCGCAGGATGCATATATTAAAGTCGCAGGCGGCGTCAAATTGGATGAACCGGCGATCGATCTTG
CGGTACTCGCGAGCATTGTTTCAAGTTTCCGGGACATTGCGCCAAAAGTGGACGATTGCATCATTGGGGAAGTCGGGTTG
ACTGGAGAGGTAAGACGGGTGTCGCGTATCGAGCAGCGCGTGCAAGAAGCAGCAAAGCTTGGGTTTAAACGCGCCATCAT
TCCGAAATCAAATATGGGTGGCTGGGATTTTCCGGAAGGAATACGCGTCGTAGGTGTGGAAACTATAAACGAGGCGCTGA
AGGAATTATTCCCACAACAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-223)

Subunit ChlI of Mg-chelatase (ChlI)

(356-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.467

98.696

0.715
  radA Streptococcus pneumoniae Rx1

61.656

99.783

0.615
  radA Streptococcus pneumoniae D39

61.656

99.783

0.615
  radA Streptococcus pneumoniae R6

61.656

99.783

0.615
  radA Streptococcus pneumoniae TIGR4

61.656

99.783

0.615
  radA Streptococcus mitis NCTC 12261

61.656

99.783

0.615
  radA Streptococcus mitis SK321

61.656

99.783

0.615