Detailed information NTG0712079

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PMJ94_RS08100
• Genome accession: NZ_CP116717
• Coordinates: 1698748..1699752 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2857
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1693748..1704752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PMJ94_RS08070 (PMJ94_08070)	fghA	1693840..1694691 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PMJ94_RS08075 (PMJ94_08075)	ispF	1694762..1695235 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PMJ94_RS08080 (PMJ94_08080)	truD	1695232..1696299 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PMJ94_RS08085 (PMJ94_08085)	surE	1696287..1697036 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PMJ94_RS08090 (PMJ94_08090)	-	1697069..1697704 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PMJ94_RS08095 (PMJ94_08095)	-	1697750..1698643 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PMJ94_RS08100 (PMJ94_08100)	rpoS	1698748..1699752 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PMJ94_RS08105 (PMJ94_08105)	fdxA	1700179..1700502 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PMJ94_RS08110 (PMJ94_08110)	mutS	1700569..1703136 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PMJ94_RS08115 (PMJ94_08115)	-	1703262..1704269 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=712079 PMJ94_RS08100 WP_003113871.1 1698748..1699752(+) (rpoS) [Pseudomonas aeruginosa strain 2857]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=712079 PMJ94_RS08100 WP_003113871.1 1698748..1699752(+) (rpoS) [Pseudomonas aeruginosa strain 2857]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653