Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   K6J60_RS01685 Genome accession   NZ_AP018778
Coordinates   338192..338488 (+) Length   98 a.a.
NCBI ID   WP_221267377.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-7 isolate 15H01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 333192..343488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J60_RS01675 (CHBNIII7_03220) - 334706..337756 (+) 3051 WP_221267376.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K6J60_RS01680 (CHBNIII7_03230) - 338017..338199 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  K6J60_RS01685 (CHBNIII7_03240) HI0659 338192..338488 (+) 297 WP_221267377.1 helix-turn-helix transcriptional regulator Machinery gene
  K6J60_RS01690 (CHBNIII7_03250) - 338672..340588 (+) 1917 WP_221267378.1 ABC transporter ATP-binding protein -
  K6J60_RS01695 (CHBNIII7_03260) - 340598..341134 (+) 537 WP_105895785.1 type I DNA topoisomerase -
  K6J60_RS01700 (CHBNIII7_03270) - 341150..341701 (+) 552 WP_221267379.1 Sua5/YciO/YrdC/YwlC family protein -
  K6J60_RS01705 (CHBNIII7_03280) aroE 341705..342523 (+) 819 WP_221267380.1 shikimate dehydrogenase -
  K6J60_RS01710 (CHBNIII7_03290) - 342520..343077 (+) 558 WP_040034200.1 DNA-3-methyladenine glycosylase I -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11082.90 Da        Isoelectric Point: 10.3139

>NTDB_id=71201 K6J60_RS01685 WP_221267377.1 338192..338488(+) (HI0659) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MNKISSLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=71201 K6J60_RS01685 WP_221267377.1 338192..338488(+) (HI0659) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGAATAAAATCAGCTCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

98.98

100

0.99


Multiple sequence alignment