Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NOX82_RS20170 Genome accession   NZ_CP101752
Coordinates   4632803..4633348 (-) Length   181 a.a.
NCBI ID   WP_256511855.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain C12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4627803..4638348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOX82_RS20160 (NOX82_20160) - 4631490..4632029 (-) 540 WP_256511853.1 PilX N-terminal domain-containing pilus assembly protein -
  NOX82_RS20165 (NOX82_20165) - 4632026..4632802 (-) 777 WP_256511854.1 PilW family protein -
  NOX82_RS20170 (NOX82_20170) pilV 4632803..4633348 (-) 546 WP_256511855.1 type IV pilus modification protein PilV Machinery gene
  NOX82_RS20175 (NOX82_20175) - 4633345..4633848 (-) 504 WP_256511856.1 GspH/FimT family pseudopilin -
  NOX82_RS20180 (NOX82_20180) - 4634872..4636221 (-) 1350 WP_256511857.1 MFS transporter -
  NOX82_RS20185 (NOX82_20185) - 4636400..4637242 (-) 843 WP_043266799.1 IclR family transcriptional regulator C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18893.55 Da        Isoelectric Point: 4.8548

>NTDB_id=711975 NOX82_RS20170 WP_256511855.1 4632803..4633348(-) (pilV) [Pseudomonas citronellolis strain C12]
MTRRGLAGFSLIEVLVALLVICVGVLGMLAMQGRAIAYSQDMAVRGTAAALADELMETIRTDLYSAQDAGTPLTPPTSSD
YYKATGSAFPAAPSSCASLAALSASQRLGCWAQRVQQALPDAASLMSSDFHICRSNGASTCSGTGSAIEIQLAWRVKSGE
CLEASPGSDPTICHYVLREEP

Nucleotide


Download         Length: 546 bp        

>NTDB_id=711975 NOX82_RS20170 WP_256511855.1 4632803..4633348(-) (pilV) [Pseudomonas citronellolis strain C12]
ATGACGCGCCGTGGCCTGGCCGGCTTCAGCCTGATCGAAGTGCTGGTGGCGCTGCTGGTGATCTGCGTCGGCGTGCTGGG
CATGCTCGCCATGCAGGGCAGGGCGATCGCCTATTCCCAGGACATGGCGGTGCGCGGCACGGCGGCAGCCCTGGCCGACG
AGCTGATGGAGACCATCCGCACCGACCTCTATTCCGCCCAGGACGCCGGCACGCCGCTGACGCCGCCGACCAGCTCCGAC
TACTACAAGGCCACCGGCAGCGCTTTCCCGGCGGCGCCGAGCAGTTGTGCCTCGCTGGCCGCGCTGAGCGCCTCGCAGCG
CCTGGGCTGCTGGGCGCAGCGGGTGCAGCAGGCGCTGCCCGATGCCGCCAGTCTGATGAGCAGCGACTTCCACATCTGCC
GCAGCAACGGCGCCAGCACCTGCAGCGGCACCGGCTCGGCCATCGAGATCCAGCTCGCTTGGCGGGTGAAGTCCGGCGAG
TGCCTGGAGGCCAGCCCCGGCAGCGACCCGACCATCTGCCACTACGTGCTGCGCGAGGAACCCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.721

98.895

0.492