Detailed information NTG0711972

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PMJ91_RS08120
• Genome accession: NZ_CP116715
• Coordinates: 1703239..1704243 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2856
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1698239..1709243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PMJ91_RS08090 (PMJ91_08090)	fghA	1698331..1699182 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PMJ91_RS08095 (PMJ91_08095)	ispF	1699253..1699726 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PMJ91_RS08100 (PMJ91_08100)	truD	1699723..1700790 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PMJ91_RS08105 (PMJ91_08105)	surE	1700778..1701527 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PMJ91_RS08110 (PMJ91_08110)	-	1701560..1702195 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PMJ91_RS08115 (PMJ91_08115)	-	1702241..1703134 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PMJ91_RS08120 (PMJ91_08120)	rpoS	1703239..1704243 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PMJ91_RS08125 (PMJ91_08125)	fdxA	1704670..1704993 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PMJ91_RS08130 (PMJ91_08130)	mutS	1705060..1707627 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PMJ91_RS08135 (PMJ91_08135)	-	1707753..1708760 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=711972 PMJ91_RS08120 WP_003113871.1 1703239..1704243(+) (rpoS) [Pseudomonas aeruginosa strain 2856]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=711972 PMJ91_RS08120 WP_003113871.1 1703239..1704243(+) (rpoS) [Pseudomonas aeruginosa strain 2856]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653