Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   K6J60_RS00275 Genome accession   NZ_AP018778
Coordinates   57459..57971 (-) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-7 isolate 15H01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52459..62971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J60_RS00260 (CHBNIII7_00520) comQ 55780..56067 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  K6J60_RS00265 (CHBNIII7_00530) comP 56060..56743 (-) 684 WP_118807362.1 DUF2572 family protein Machinery gene
  K6J60_RS00270 (CHBNIII7_00540) comO 56743..57459 (-) 717 WP_005651546.1 type II secretion system protein J Machinery gene
  K6J60_RS00275 (CHBNIII7_00550) comN 57459..57971 (-) 513 WP_013526183.1 type II secretion system protein Machinery gene
  K6J60_RS00280 (CHBNIII7_00560) suhB 58171..58974 (+) 804 WP_048951686.1 inositol-1-monophosphatase -
  K6J60_RS00285 (CHBNIII7_00570) nrfE 59083..60990 (+) 1908 WP_118807363.1 heme lyase NrfEFG subunit NrfE -
  K6J60_RS00290 (CHBNIII7_00580) - 60990..61520 (+) 531 WP_005666027.1 DsbE family thiol:disulfide interchange protein -
  K6J60_RS00295 (CHBNIII7_00590) nrfF 61517..62671 (+) 1155 WP_118807364.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=71197 K6J60_RS00275 WP_013526183.1 57459..57971(-) (comN) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=71197 K6J60_RS00275 WP_013526183.1 57459..57971(-) (comN) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCCGTGCCATT
ATGGAAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAAGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994

Multiple sequence alignment