Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   K6J60_RS00265 Genome accession   NZ_AP018778
Coordinates   56060..56743 (-) Length   227 a.a.
NCBI ID   WP_118807362.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-7 isolate 15H01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51060..61743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J60_RS00250 (CHBNIII7_00500) nrdR 51865..52314 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  K6J60_RS00255 (CHBNIII7_00510) recC 52375..55734 (-) 3360 WP_118807361.1 exodeoxyribonuclease V subunit gamma -
  K6J60_RS00260 (CHBNIII7_00520) comQ 55780..56067 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  K6J60_RS00265 (CHBNIII7_00530) comP 56060..56743 (-) 684 WP_118807362.1 DUF2572 family protein Machinery gene
  K6J60_RS00270 (CHBNIII7_00540) comO 56743..57459 (-) 717 WP_005651546.1 type II secretion system protein J Machinery gene
  K6J60_RS00275 (CHBNIII7_00550) comN 57459..57971 (-) 513 WP_013526183.1 type II secretion system protein Machinery gene
  K6J60_RS00280 (CHBNIII7_00560) suhB 58171..58974 (+) 804 WP_048951686.1 inositol-1-monophosphatase -
  K6J60_RS00285 (CHBNIII7_00570) nrfE 59083..60990 (+) 1908 WP_118807363.1 heme lyase NrfEFG subunit NrfE -
  K6J60_RS00290 (CHBNIII7_00580) - 60990..61520 (+) 531 WP_005666027.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25405.35 Da        Isoelectric Point: 9.5062

>NTDB_id=71195 K6J60_RS00265 WP_118807362.1 56060..56743(-) (comP) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MTIQKGIITLTILIFISGLLTVILLLDDNHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACLDLPLNNNESVKQISIA
LEGATDAIQYFLWCERMSLFKKSPKKGDNQGALKDFVSGEKLAYFRLHFSSPPKILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=71195 K6J60_RS00265 WP_118807362.1 56060..56743(-) (comP) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGACTATACAAAAAGGCATTATCACGCTGACTATTCTAATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAACCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACCGCGACGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTGCCACCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGCGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACTGCACTTTTCTTCCCCGCCCA
AAATTTTAAACGCGAATAAAATGCCTAAACTGTATTGGTTTTCAGATTCACAAGCAGAGGTTGAAATTAATGGAACCGTA
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGAATTAGTGGCGCAGTGATTACCAGTGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

96.476

100

0.965

Multiple sequence alignment