Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NPN27_RS04465 Genome accession   NZ_CP101739
Coordinates   930143..930658 (-) Length   171 a.a.
NCBI ID   WP_256519127.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain J15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 925143..935658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPN27_RS04455 (NPN27_04455) - 928791..929309 (-) 519 WP_017245351.1 pilus assembly PilX family protein -
  NPN27_RS04460 (NPN27_04460) - 929306..930133 (-) 828 WP_017245350.1 PilW family protein -
  NPN27_RS04465 (NPN27_04465) pilV 930143..930658 (-) 516 WP_256519127.1 type IV pilus modification protein PilV Machinery gene
  NPN27_RS04470 (NPN27_04470) - 930664..931158 (-) 495 WP_256518779.1 GspH/FimT family pseudopilin -
  NPN27_RS04475 (NPN27_04475) - 931341..931841 (-) 501 WP_080585083.1 GspH/FimT family pseudopilin -
  NPN27_RS04480 (NPN27_04480) thiO 931971..933068 (+) 1098 WP_256518781.1 glycine oxidase ThiO -
  NPN27_RS04485 (NPN27_04485) - 933217..933588 (+) 372 WP_014595914.1 translation initiation factor Sui1 -
  NPN27_RS04490 (NPN27_04490) speA 933711..935624 (+) 1914 WP_017245344.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18472.16 Da        Isoelectric Point: 4.7198

>NTDB_id=711866 NPN27_RS04465 WP_256519127.1 930143..930658(-) (pilV) [Stutzerimonas stutzeri strain J15]
MNKRPDKRCSSGFSMIEVVVTLVLISIGVLGMVALQARTIQYTQDAVQRNTAAMLANDLVELIRAMPDEINDFYNAAGAT
FPDLPATGCAPLPAKAADQLSCWAERAKTALPGASDLLTSDFYICRTATANTCSGAGDAIEIQLAWRVKEGVCENSGDDK
TICYYRLRTQI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=711866 NPN27_RS04465 WP_256519127.1 930143..930658(-) (pilV) [Stutzerimonas stutzeri strain J15]
ATGAATAAAAGGCCAGACAAACGTTGCTCGTCGGGCTTCAGCATGATCGAAGTAGTGGTCACCCTTGTTCTAATCAGCAT
CGGTGTACTGGGAATGGTCGCCCTACAAGCTCGCACCATCCAATACACCCAGGACGCCGTACAACGCAACACCGCCGCCA
TGCTGGCCAACGACCTGGTGGAACTGATACGTGCCATGCCTGACGAGATAAACGACTTCTACAACGCCGCCGGCGCAACC
TTCCCAGATTTGCCCGCCACAGGCTGTGCGCCGTTACCCGCCAAGGCAGCAGACCAACTGAGCTGCTGGGCGGAGAGAGC
CAAAACCGCCCTACCCGGCGCCAGTGATTTGCTGACTAGTGACTTCTATATCTGCCGTACAGCCACCGCTAACACCTGCA
GCGGAGCCGGCGACGCCATCGAAATCCAGCTGGCCTGGCGCGTTAAGGAAGGCGTCTGTGAGAACTCTGGCGACGACAAG
ACCATTTGCTACTACCGCCTGCGCACCCAGATATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

52.023

100

0.526